| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is yrbG [H]
Identifier: 146300336
GI number: 146300336
Start: 3070745
End: 3071263
Strand: Reverse
Name: yrbG [H]
Synonym: Fjoh_2581
Alternate gene names: 146300336
Gene position: 3071263-3070745 (Counterclockwise)
Preceding gene: 146300337
Following gene: 146300330
Centisome position: 50.37
GC content: 33.14
Gene sequence:
>519_bases ATGTCATTTCCTTATTTAGATATTATTTTTAGAAGTGTTGCTGTTTATTTTTTCATGACAATTGCTCTTCGCATTTTCGG TAAAAAAGAACTTTCACAATTAAATACTGCCGATATTATTCTGATTTTACTAATCAGTAATTCTGTTCAAAACGCAATGG TGGGTCCAGACACTAGCCTTGTTGGCGGTTTGGTTGCAGCTTTAGTTTTATTTGTAATTAACTTTGCTATTAAAAAACTA ACTAAGAGATCCAAAATCTTAGGCGATTTGATACTTGACAAACCTGAAGTTTTAATTCATGACGGAGTATTAGATTTCAA AGCTTTGAGCAGACTAGATATTTCGCACGAAGAATTAAAGGAAGCAGCACGCGAACACGGTTTAGAACATCTTACCGACA TCAAACTTGCTATGCTGGAAATGGACGGAACGATAAGTGTTATTTCTGCAGATCAAAAACATCTTAAGCAATCGCATTAT AAGCGAAAACACAATCATAAAAATCTTCAAAAATTTTAA
Upstream 100 bases:
>100_bases AAGTTCATTTTAACTTAATCATCTCAAAATAATTTAGCTGCTTTGTCAAAGTTTAAAACCTTTGACAAAGCTTTTTTATT TAACTTTAAAATAAAAAGTT
Downstream 100 bases:
>100_bases TTGCAGACATCAAAAAGCCGATTTCAAATTAGAAATCGGCTTTTGTTTTAATAGTTATCAGGATCTATTCCTTTTATTGT TTTATTTGTTAATCCAAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 172; Mature: 171
Protein sequence:
>172_residues MSFPYLDIIFRSVAVYFFMTIALRIFGKKELSQLNTADIILILLISNSVQNAMVGPDTSLVGGLVAALVLFVINFAIKKL TKRSKILGDLILDKPEVLIHDGVLDFKALSRLDISHEELKEAAREHGLEHLTDIKLAMLEMDGTISVISADQKHLKQSHY KRKHNHKNLQKF
Sequences:
>Translated_172_residues MSFPYLDIIFRSVAVYFFMTIALRIFGKKELSQLNTADIILILLISNSVQNAMVGPDTSLVGGLVAALVLFVINFAIKKL TKRSKILGDLILDKPEVLIHDGVLDFKALSRLDISHEELKEAAREHGLEHLTDIKLAMLEMDGTISVISADQKHLKQSHY KRKHNHKNLQKF >Mature_171_residues SFPYLDIIFRSVAVYFFMTIALRIFGKKELSQLNTADIILILLISNSVQNAMVGPDTSLVGGLVAALVLFVINFAIKKLT KRSKILGDLILDKPEVLIHDGVLDFKALSRLDISHEELKEAAREHGLEHLTDIKLAMLEMDGTISVISADQKHLKQSHYK RKHNHKNLQKF
Specific function: Unknown
COG id: COG2323
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0702 family [H]
Homologues:
Organism=Escherichia coli, GI1787135, Length=141, Percent_Identity=26.241134751773, Blast_Score=61, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007353 - InterPro: IPR023090 [H]
Pfam domain/function: PF04239 DUF421 [H]
EC number: NA
Molecular weight: Translated: 19406; Mature: 19275
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFPYLDIIFRSVAVYFFMTIALRIFGKKELSQLNTADIILILLISNSVQNAMVGPDTSL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHCCCCHHH VGGLVAALVLFVINFAIKKLTKRSKILGDLILDKPEVLIHDGVLDFKALSRLDISHEELK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHCCCCHHHHH EAAREHGLEHLTDIKLAMLEMDGTISVISADQKHLKQSHYKRKHNHKNLQKF HHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SFPYLDIIFRSVAVYFFMTIALRIFGKKELSQLNTADIILILLISNSVQNAMVGPDTSL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHCCCCHHH VGGLVAALVLFVINFAIKKLTKRSKILGDLILDKPEVLIHDGVLDFKALSRLDISHEELK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHCCCCHHHHH EAAREHGLEHLTDIKLAMLEMDGTISVISADQKHLKQSHYKRKHNHKNLQKF HHHHHCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]