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The map label for this gene is ycdK [C]

Identifier: 146300127

GI number: 146300127

Start: 2842547

End: 2842930

Strand: Reverse

Name: ycdK [C]

Synonym: Fjoh_2372

Alternate gene names: 146300127

Gene position: 2842930-2842547 (Counterclockwise)

Preceding gene: 146300128

Following gene: 146300126

Centisome position: 46.63

GC content: 36.98

Gene sequence:

>384_bases
ATGAAAAGAGAAAACATCTTAACAGGATCGCCGTGGGAAGACAAAATGGGATACTGCCGCGCTGTAAGAATTGGCAATAT
CATCGAAGTTTCGGGCACAGTAGCAATTGTTGACGGCGATAAGGTAAAAGCCGACGATGCTTATGCTCAGACTTATAATA
TAATTGAACGCGTTGAAAAAGTGCTGCAAGACTTAAATGTTGGAATTAAAGACGTAATCAGAACACGCATTTTTACAACA
AATGTTGATACTTTTGAGGAAGTTGCAAGAGCACACTCTGCTTTTTTTAAAGATGTAAAACCAACTACAGGCTTTTATGA
AATCAGTAAATTAGTTGCTCCTGAATATTTGGTTGAAATTGAATTTACAGCTGTAGTTCAGTAA

Upstream 100 bases:

>100_bases
ATAATTCTTTTTGCCAAGCTTATTTCATAAATTGCAGCGCATTAATTAACCTGAATTTGTTTTTAAAAATCTCATAAAAC
AATTCGAAAAAACTCATAAA

Downstream 100 bases:

>100_bases
TTTTAGCAGCCACGAATTTTAAAAAAAATCATTTTTAATCCATTTAATCTGTGAAAAATCGTGAAATTCGTGGCTGAAAT
AATTTTACTCTTTGAATGAC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MKRENILTGSPWEDKMGYCRAVRIGNIIEVSGTVAIVDGDKVKADDAYAQTYNIIERVEKVLQDLNVGIKDVIRTRIFTT
NVDTFEEVARAHSAFFKDVKPTTGFYEISKLVAPEYLVEIEFTAVVQ

Sequences:

>Translated_127_residues
MKRENILTGSPWEDKMGYCRAVRIGNIIEVSGTVAIVDGDKVKADDAYAQTYNIIERVEKVLQDLNVGIKDVIRTRIFTT
NVDTFEEVARAHSAFFKDVKPTTGFYEISKLVAPEYLVEIEFTAVVQ
>Mature_127_residues
MKRENILTGSPWEDKMGYCRAVRIGNIIEVSGTVAIVDGDKVKADDAYAQTYNIIERVEKVLQDLNVGIKDVIRTRIFTT
NVDTFEEVARAHSAFFKDVKPTTGFYEISKLVAPEYLVEIEFTAVVQ

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14335; Mature: 14335

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRENILTGSPWEDKMGYCRAVRIGNIIEVSGTVAIVDGDKVKADDAYAQTYNIIERVEK
CCCCCCCCCCCCHHHHHHHHHEECCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHH
VLQDLNVGIKDVIRTRIFTTNVDTFEEVARAHSAFFKDVKPTTGFYEISKLVAPEYLVEI
HHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHEEEE
EFTAVVQ
EEEEECC
>Mature Secondary Structure
MKRENILTGSPWEDKMGYCRAVRIGNIIEVSGTVAIVDGDKVKADDAYAQTYNIIERVEK
CCCCCCCCCCCCHHHHHHHHHEECCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHH
VLQDLNVGIKDVIRTRIFTTNVDTFEEVARAHSAFFKDVKPTTGFYEISKLVAPEYLVEI
HHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHEEEE
EFTAVVQ
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953; 2199329 [H]