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The map label for this gene is ycbB [H]

Identifier: 146300086

GI number: 146300086

Start: 2798581

End: 2800140

Strand: Reverse

Name: ycbB [H]

Synonym: Fjoh_2331

Alternate gene names: 146300086

Gene position: 2800140-2798581 (Counterclockwise)

Preceding gene: 146300089

Following gene: 146300085

Centisome position: 45.93

GC content: 32.05

Gene sequence:

>1560_bases
ATGAAAATGAAAACTTTATATTCACTAAGCATTATTTTAGCTCTAAGTTTTAGCGTCGTATCTTTTAGTAAATATGAAAG
CACCGATACTAAAGAGCATAAATCTAACACCTCAATCTTTTACAATTCAGATAATGATGCTGTAAAAGAAAGCGTTTCAA
ATGAATTCTTCAAAAAATATACTGATTTAAAAAAGTATAAATCTGAAGTAATGTCATTATACAAAAACAGAACTCTGGGA
ACTATTTGGTTTGATGAAGATGAAATCAACGAATTTGGTTCTGTATTGTATGAAAAAGCAAAAAAAACAAACGATTTGGT
TATTCCATACCAAAAAGAAATCGACCAGCTTTTTGATTCTTCATCAGAAAATAACATTTCTAAAACTGATGCGGATATGC
TTTTAAGCTCTTTGTATGTTCTATACGCCAAAAAAAGCAATTCAGACAAGAAAAAATTGTCTTATGATGCCATGCTGAAA
GATTTTTTAAATTACAGCACAATCGAAGAAGCTACTGCAAAAGTTGAAGATGATGGAAATCTTTATGACCAATATTACAA
ACTGCAAGGTGTTTTAAAACAATACAAAAAACTTGAAAAATCAAGTAAATGGAAACCTATTGTTGCAGAAACTCCTTATA
AAGATTTGCGACCTGATGCTGTTTCACCTACTATCGCTCAGGTTAGAACCCGTTTGTATTTATTGGGCGATTTAAAACAA
GATTCTAAAAGCGATTTTTATGATCGTGAACTAATGGACGGCGTTATGAAATACAAAGTTCGTAACGGTTTTAAACCAAA
TTATATTTTAGCAGAAGAACATATTAAAGAAATGAATATTCCAGTTTCGGATAAAGTAAAAACTTTGATGCTTAACATGG
AAAGAATTCGCGCTATTTCTCCAGAATTAGTCAACAATGACGAATATGTTCTGGTAAATGTGCCTTCGTATGAATTGATT
TATGTTAAAAACGGAAAAATAGAATTAACATCAAGCGTTTTTGTTGGTTCTCCTTTAACTAAAACTACCATTTTTAACGG
GCAGATTGACAGAATCGTTTTTAGTCCGTATTGGACAGTACCTCAAAGTATTGTTCAAAATGAGTTAAGATCTAAAATTG
CTGCAGATCCAAATTACCTTGCAGAAAAAAATATGGAAATGGTAAACGGACAAGTACGACAAAAACCAGGTCCTGATAAC
TCTTTAGGTTTGGTTAAATTTATGTTTCCAAACTCAGACGATATTTACATGCACGATACGCCTTCTAAAACTTTATTCGA
TTTCGAAAAAAGAACTTTCAGCCACGGTTGTATTAACGTAAAAATGGCCAAAGAATTAGCCGTTGCCATGCTGAAAGATT
ATCCTGAATGGACTCAGGCAAAAATTGATAAAGCTATGGAAGGTAAAGTAGAAAGCAGTTTTAAACTTTCTAAAAAAGTG
CCAATCTATATCACTTATTTTACCTCTTTGGTAAATGAAAACGGTCAAATTGGTTTCTTTCAGGATGTTTATGAAAAAGA
TGCTGAGTCAGCTCCGCAGACTGCTCTTACTGTCAATTAA

Upstream 100 bases:

>100_bases
TAAACATGTTTCGCCGCTTCCTAAAGTAATTTAGCAATGTAGAAAAGGCCCCAGATTTTTACCCAAAACTTGAAATCTAA
GTAGTAACGTAAAAATTTAA

Downstream 100 bases:

>100_bases
TTTATTCAGAACACAGAATATATCGGAAACTCATTTAGTTGGGTTTCCGATTTTTTTTCTCCTAAAAATTAACCTTAATT
TATTATTTTTAAAACTTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MKMKTLYSLSIILALSFSVVSFSKYESTDTKEHKSNTSIFYNSDNDAVKESVSNEFFKKYTDLKKYKSEVMSLYKNRTLG
TIWFDEDEINEFGSVLYEKAKKTNDLVIPYQKEIDQLFDSSSENNISKTDADMLLSSLYVLYAKKSNSDKKKLSYDAMLK
DFLNYSTIEEATAKVEDDGNLYDQYYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLKQ
DSKSDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAISPELVNNDEYVLVNVPSYELI
YVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTVPQSIVQNELRSKIAADPNYLAEKNMEMVNGQVRQKPGPDN
SLGLVKFMFPNSDDIYMHDTPSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKIDKAMEGKVESSFKLSKKV
PIYITYFTSLVNENGQIGFFQDVYEKDAESAPQTALTVN

Sequences:

>Translated_519_residues
MKMKTLYSLSIILALSFSVVSFSKYESTDTKEHKSNTSIFYNSDNDAVKESVSNEFFKKYTDLKKYKSEVMSLYKNRTLG
TIWFDEDEINEFGSVLYEKAKKTNDLVIPYQKEIDQLFDSSSENNISKTDADMLLSSLYVLYAKKSNSDKKKLSYDAMLK
DFLNYSTIEEATAKVEDDGNLYDQYYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLKQ
DSKSDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAISPELVNNDEYVLVNVPSYELI
YVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTVPQSIVQNELRSKIAADPNYLAEKNMEMVNGQVRQKPGPDN
SLGLVKFMFPNSDDIYMHDTPSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKIDKAMEGKVESSFKLSKKV
PIYITYFTSLVNENGQIGFFQDVYEKDAESAPQTALTVN
>Mature_519_residues
MKMKTLYSLSIILALSFSVVSFSKYESTDTKEHKSNTSIFYNSDNDAVKESVSNEFFKKYTDLKKYKSEVMSLYKNRTLG
TIWFDEDEINEFGSVLYEKAKKTNDLVIPYQKEIDQLFDSSSENNISKTDADMLLSSLYVLYAKKSNSDKKKLSYDAMLK
DFLNYSTIEEATAKVEDDGNLYDQYYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLKQ
DSKSDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAISPELVNNDEYVLVNVPSYELI
YVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTVPQSIVQNELRSKIAADPNYLAEKNMEMVNGQVRQKPGPDN
SLGLVKFMFPNSDDIYMHDTPSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKIDKAMEGKVESSFKLSKKV
PIYITYFTSLVNENGQIGFFQDVYEKDAESAPQTALTVN

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=285, Percent_Identity=28.7719298245614, Blast_Score=156, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59690; Mature: 59690

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKTLYSLSIILALSFSVVSFSKYESTDTKEHKSNTSIFYNSDNDAVKESVSNEFFKKY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
TDLKKYKSEVMSLYKNRTLGTIWFDEDEINEFGSVLYEKAKKTNDLVIPYQKEIDQLFDS
HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCC
SSENNISKTDADMLLSSLYVLYAKKSNSDKKKLSYDAMLKDFLNYSTIEEATAKVEDDGN
CCCCCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC
LYDQYYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLKQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHEEECCCC
DSKSDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAIS
CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PELVNNDEYVLVNVPSYELIYVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTV
CHHCCCCCEEEEECCCEEEEEEECCEEEEECCEEECCCCCCEEEECCCCCEEEECCCCCC
PQSIVQNELRSKIAADPNYLAEKNMEMVNGQVRQKPGPDNSLGLVKFMFPNSDDIYMHDT
HHHHHHHHHHHHHCCCCCHHHHCCHHHHCCHHHCCCCCCCCCEEEEEECCCCCCEEEECC
PSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKIDKAMEGKVESSFKLSKKV
CCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHCCCC
PIYITYFTSLVNENGQIGFFQDVYEKDAESAPQTALTVN
CEEEEEHHHHHCCCCCEEHHHHHHHHHHCCCCCCEEEEC
>Mature Secondary Structure
MKMKTLYSLSIILALSFSVVSFSKYESTDTKEHKSNTSIFYNSDNDAVKESVSNEFFKKY
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEECCCCHHHHHHHHHHHHHHH
TDLKKYKSEVMSLYKNRTLGTIWFDEDEINEFGSVLYEKAKKTNDLVIPYQKEIDQLFDS
HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCC
SSENNISKTDADMLLSSLYVLYAKKSNSDKKKLSYDAMLKDFLNYSTIEEATAKVEDDGN
CCCCCCCHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC
LYDQYYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLKQ
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHEEECCCC
DSKSDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAIS
CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
PELVNNDEYVLVNVPSYELIYVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTV
CHHCCCCCEEEEECCCEEEEEEECCEEEEECCEEECCCCCCEEEECCCCCEEEECCCCCC
PQSIVQNELRSKIAADPNYLAEKNMEMVNGQVRQKPGPDNSLGLVKFMFPNSDDIYMHDT
HHHHHHHHHHHHHCCCCCHHHHCCHHHHCCHHHCCCCCCCCCEEEEEECCCCCCEEEECC
PSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKIDKAMEGKVESSFKLSKKV
CCCHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHCCCC
PIYITYFTSLVNENGQIGFFQDVYEKDAESAPQTALTVN
CEEEEEHHHHHCCCCCEEHHHHHHHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]