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The map label for this gene is araC [C]

Identifier: 146300079

GI number: 146300079

Start: 2792037

End: 2792957

Strand: Reverse

Name: araC [C]

Synonym: Fjoh_2324

Alternate gene names: 146300079

Gene position: 2792957-2792037 (Counterclockwise)

Preceding gene: 146300080

Following gene: 146300075

Centisome position: 45.81

GC content: 31.81

Gene sequence:

>921_bases
ATGAAGAAAGAAGATCATACTCCGTATAACATTACCTCTATTTCAGAATTACATCAATTGTTACAAATTCCAAAACCAGA
TCATCCTTTGGTAAGTTTTGTGAATATGAGAGATATAAGTTGTCAATTTGATAATAATTTAAAGAGTGTGATTTATAACT
TCTATACGATTTCGATAAAAAGAGGATTTAAAGGAAAAATGAGATACGGTCAAAATTATTATGATTTTGATGAAGGAGTT
ATGACATTTATGGGGCCAGGCCAAGTTATTTCTACAGAAGTGCCAATGGATTCTTCGGTATCTGGCTCAATGTTAGTCAT
TCATCCTGATTTTATTCAGAATTATGCTTTGGCAAAAAAAATAAAAGAGTACGGATATTTCTCTTATGCTGTTAATGAGG
CATTGCATCTTTCAGAAAAAGAAGAAACAATGATTACAGGAATTATGCAGAATATCGAACAAGAGTACCTGTCTTCTATT
GATGCTTTCAGTCAAGATGTAATGGTTTCTCATATTGAACTGCTTCTTAATTATTGCAATCGTTTTTACAACCGACAGTT
TATTACCCGAAAAAATGCAAACAATACGCTTTTAACTAAACTGGAACTTCTTCTTTCTGAATATTTTGAAAGTGATAAAG
TTGAGAAATTAGGATTACCAACTGTCGCGTATATTTCAGAACAATTAAATGTTACGCCAAATTATCTCAGCGATATGCTG
CGCTCGCTGACCGGACAAAGCACACAGCATCATATTCATAATAAAATTATTGAAAAGGCAAAAGAACTTCTTACCACAAC
TACCCTGAGTGTAAGTGAAACTGCTTATAAATTAGGTTTCGAATATCCGCAATCTTTTAATAAACTTTTCAAAAGTAAAA
CCGACCTTTCACCTTTAGAATTTAGAAATTCATTTAATTAA

Upstream 100 bases:

>100_bases
TGAATCTGGAATGAAATCTGTTAATCTATAAGAAATCAGAAAAAAAATCTACAGGAAAAGTTATCTTTATGACAGCTTTT
CCTGTATTAAACCTAAAGCG

Downstream 100 bases:

>100_bases
TTTTTCAACCTTTCGTGAAGTAATTTAAAATACGAGAAAGCCTTTAACAATCGGCTGCCGTGCCAAGAGAACATTTCTCC
GTCGACGAAAATGGTTTTGG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcription Regulator; Transcriptional Regulator AraC Type

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKKEDHTPYNITSISELHQLLQIPKPDHPLVSFVNMRDISCQFDNNLKSVIYNFYTISIKRGFKGKMRYGQNYYDFDEGV
MTFMGPGQVISTEVPMDSSVSGSMLVIHPDFIQNYALAKKIKEYGYFSYAVNEALHLSEKEETMITGIMQNIEQEYLSSI
DAFSQDVMVSHIELLLNYCNRFYNRQFITRKNANNTLLTKLELLLSEYFESDKVEKLGLPTVAYISEQLNVTPNYLSDML
RSLTGQSTQHHIHNKIIEKAKELLTTTTLSVSETAYKLGFEYPQSFNKLFKSKTDLSPLEFRNSFN

Sequences:

>Translated_306_residues
MKKEDHTPYNITSISELHQLLQIPKPDHPLVSFVNMRDISCQFDNNLKSVIYNFYTISIKRGFKGKMRYGQNYYDFDEGV
MTFMGPGQVISTEVPMDSSVSGSMLVIHPDFIQNYALAKKIKEYGYFSYAVNEALHLSEKEETMITGIMQNIEQEYLSSI
DAFSQDVMVSHIELLLNYCNRFYNRQFITRKNANNTLLTKLELLLSEYFESDKVEKLGLPTVAYISEQLNVTPNYLSDML
RSLTGQSTQHHIHNKIIEKAKELLTTTTLSVSETAYKLGFEYPQSFNKLFKSKTDLSPLEFRNSFN
>Mature_306_residues
MKKEDHTPYNITSISELHQLLQIPKPDHPLVSFVNMRDISCQFDNNLKSVIYNFYTISIKRGFKGKMRYGQNYYDFDEGV
MTFMGPGQVISTEVPMDSSVSGSMLVIHPDFIQNYALAKKIKEYGYFSYAVNEALHLSEKEETMITGIMQNIEQEYLSSI
DAFSQDVMVSHIELLLNYCNRFYNRQFITRKNANNTLLTKLELLLSEYFESDKVEKLGLPTVAYISEQLNVTPNYLSDML
RSLTGQSTQHHIHNKIIEKAKELLTTTTLSVSETAYKLGFEYPQSFNKLFKSKTDLSPLEFRNSFN

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35362; Mature: 35362

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEDHTPYNITSISELHQLLQIPKPDHPLVSFVNMRDISCQFDNNLKSVIYNFYTISIK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCCCHHHHHHHHHEEEEE
RGFKGKMRYGQNYYDFDEGVMTFMGPGQVISTEVPMDSSVSGSMLVIHPDFIQNYALAKK
CCCCCCHHCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHH
IKEYGYFSYAVNEALHLSEKEETMITGIMQNIEQEYLSSIDAFSQDVMVSHIELLLNYCN
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFYNRQFITRKNANNTLLTKLELLLSEYFESDKVEKLGLPTVAYISEQLNVTPNYLSDML
HHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHH
RSLTGQSTQHHIHNKIIEKAKELLTTTTLSVSETAYKLGFEYPQSFNKLFKSKTDLSPLE
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHH
FRNSFN
HCCCCC
>Mature Secondary Structure
MKKEDHTPYNITSISELHQLLQIPKPDHPLVSFVNMRDISCQFDNNLKSVIYNFYTISIK
CCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCCCHHHHHHHHHEEEEE
RGFKGKMRYGQNYYDFDEGVMTFMGPGQVISTEVPMDSSVSGSMLVIHPDFIQNYALAKK
CCCCCCHHCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHH
IKEYGYFSYAVNEALHLSEKEETMITGIMQNIEQEYLSSIDAFSQDVMVSHIELLLNYCN
HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFYNRQFITRKNANNTLLTKLELLLSEYFESDKVEKLGLPTVAYISEQLNVTPNYLSDML
HHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCHHHHHHHH
RSLTGQSTQHHIHNKIIEKAKELLTTTTLSVSETAYKLGFEYPQSFNKLFKSKTDLSPLE
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHH
FRNSFN
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA