Click here to switch to the map view.

The map label for this gene is traF [H]

Identifier: 146284625

GI number: 146284625

Start: 122728

End: 123513

Strand: Direct

Name: traF [H]

Synonym: Ent638_4299

Alternate gene names: 146284625

Gene position: 122728-123513 (Clockwise)

Preceding gene: 146284624

Following gene: 146284626

Centisome position: 77.8

GC content: 58.78

Gene sequence:

>786_bases
ATGAAAAGACTGATGTGCGGCCTGCTGATGGTCGTGACCAGTCTGCCAGCCATTGCGGAGGAGATTATCACCCCCGCCGA
CCCGTTCACCGGCTGGTCCTGGTATAACGAACCGAAAACGCCCCCGGATAAGTACCCGAAACCTCAGCAACCCGCGCCGC
CGACGACCATTCCTGATCTCAGTAAAATGACCGCGCTGGAGCAGGCAAAGGTGCTGAAGGGCTACACGATGGAGGCGCTA
AACCGCGCCATCCTGTACCCCACGCGGGAGAACACGGCGACGTTCCTGCGCTGGCAGAAGTTCTGGACTGACCGGGGCTC
CATGTTCAGCCAGTCATTCGCAGCGGCCCAGCTGAGTCATCCTGATCTGGATTACAACCTGGAGTACCCGCACTACAACA
GCATGGCCCCGTTTGTGCAGACGCGCGATCAGCAGACGCAGCAAAACGCGGTCGCGCAGCTGTCTCAGCAATATGGTCTG
TTCTACTTCTACCGGGGCAGTGACCCGATTGATGTGCAGATGGCCGGGGTGGTGGCTGATTTTGCGAAAACGAACGGGAT
ATCCCTCATCCCCGTGTCGGTCGACGGGCAGGTGGCAGCAACATTACCGCAGAGCCGTCCGGATACGGGCCAGTCGCATA
CGATGAACATCTCGCACTACCCGGCCCTGTTCCTGGTTGATGCAAAAAGCAAAAACTACCGCGCCCTGTCTTACGGCTTT
ATGACGCAGGACGACCTGTCGAAGCGCTTCCTGAACGTGGCCACCGGCTTTAAACCCCACTCCTGA

Upstream 100 bases:

>100_bases
AGGACCTGATGAAAAATCAGAAGATCCCCGACACGTCGGCGCAGGTAAAGCTCATCAAAGAACGTATTGCGGCGCAGGTG
AATCAGCAGGGAGGCAATAA

Downstream 100 bases:

>100_bases
GAATTTTCTATGACAAAAATACTTTTCACGCTCATCCGGGATGCAGGGCGCTTAGCTCTGTACGCTTTTGTGCTCGGTCC
GGCACTTGTGCTGTATCTGT

Product: conjugal pilus assembly protein TraF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MKRLMCGLLMVVTSLPAIAEEIITPADPFTGWSWYNEPKTPPDKYPKPQQPAPPTTIPDLSKMTALEQAKVLKGYTMEAL
NRAILYPTRENTATFLRWQKFWTDRGSMFSQSFAAAQLSHPDLDYNLEYPHYNSMAPFVQTRDQQTQQNAVAQLSQQYGL
FYFYRGSDPIDVQMAGVVADFAKTNGISLIPVSVDGQVAATLPQSRPDTGQSHTMNISHYPALFLVDAKSKNYRALSYGF
MTQDDLSKRFLNVATGFKPHS

Sequences:

>Translated_261_residues
MKRLMCGLLMVVTSLPAIAEEIITPADPFTGWSWYNEPKTPPDKYPKPQQPAPPTTIPDLSKMTALEQAKVLKGYTMEAL
NRAILYPTRENTATFLRWQKFWTDRGSMFSQSFAAAQLSHPDLDYNLEYPHYNSMAPFVQTRDQQTQQNAVAQLSQQYGL
FYFYRGSDPIDVQMAGVVADFAKTNGISLIPVSVDGQVAATLPQSRPDTGQSHTMNISHYPALFLVDAKSKNYRALSYGF
MTQDDLSKRFLNVATGFKPHS
>Mature_261_residues
MKRLMCGLLMVVTSLPAIAEEIITPADPFTGWSWYNEPKTPPDKYPKPQQPAPPTTIPDLSKMTALEQAKVLKGYTMEAL
NRAILYPTRENTATFLRWQKFWTDRGSMFSQSFAAAQLSHPDLDYNLEYPHYNSMAPFVQTRDQQTQQNAVAQLSQQYGL
FYFYRGSDPIDVQMAGVVADFAKTNGISLIPVSVDGQVAATLPQSRPDTGQSHTMNISHYPALFLVDAKSKNYRALSYGF
MTQDDLSKRFLNVATGFKPHS

Specific function: Involved in F pilus assembly [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014110 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29333; Mature: 29333

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLMCGLLMVVTSLPAIAEEIITPADPFTGWSWYNEPKTPPDKYPKPQQPAPPTTIPDL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
SKMTALEQAKVLKGYTMEALNRAILYPTRENTATFLRWQKFWTDRGSMFSQSFAAAQLSH
HHHHHHHHHHHHHCCCHHHHCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
PDLDYNLEYPHYNSMAPFVQTRDQQTQQNAVAQLSQQYGLFYFYRGSDPIDVQMAGVVAD
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEHHHHHHH
FAKTNGISLIPVSVDGQVAATLPQSRPDTGQSHTMNISHYPALFLVDAKSKNYRALSYGF
HHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECC
MTQDDLSKRFLNVATGFKPHS
CCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKRLMCGLLMVVTSLPAIAEEIITPADPFTGWSWYNEPKTPPDKYPKPQQPAPPTTIPDL
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
SKMTALEQAKVLKGYTMEALNRAILYPTRENTATFLRWQKFWTDRGSMFSQSFAAAQLSH
HHHHHHHHHHHHHCCCHHHHCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
PDLDYNLEYPHYNSMAPFVQTRDQQTQQNAVAQLSQQYGLFYFYRGSDPIDVQMAGVVAD
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEEHHHHHHH
FAKTNGISLIPVSVDGQVAATLPQSRPDTGQSHTMNISHYPALFLVDAKSKNYRALSYGF
HHHCCCCEEEEEECCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECC
MTQDDLSKRFLNVATGFKPHS
CCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3042757; 7915817; 1593622 [H]