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The map label for this gene is ybbI [C]

Identifier: 146284586

GI number: 146284586

Start: 88396

End: 88821

Strand: Reverse

Name: ybbI [C]

Synonym: Ent638_4260

Alternate gene names: 146284586

Gene position: 88821-88396 (Counterclockwise)

Preceding gene: 146284597

Following gene: 146284580

Centisome position: 56.31

GC content: 51.41

Gene sequence:

>426_bases
ATGAAACTTCTGGATATTGGTGAAGTTGCGAAGGTAAGCGGAGTCAGCCCGTCGGCCCTTCGCTATTACGAGGAAACAGG
TCTGATTTCTCCAGTTGCCCGTCGGGGATTGCGGCGACAATATTCCCCTGACGTGCTCCTGCGGCTAAACCTGATAATTA
TGGGTAAGGCGGCAAATTTTTCGCTTGATGAAATCGCGGGGATGTTTAGCAGAGATGGAAAACCTGAAATTTCCCGTGCC
CTCTGTAGTGCGAAAGCCCTGGAGCTGAACGAAAAAATAAACGACCTGACAGCACTGCGTGACACGCTGCTTCACGTGGC
CAGTTGCCCTGCCTTATCACATATGGACTGTCCAACGTTCAGACGGCTCGCCGGAATAGCAGGAAAACGCCACCGGGGAC
AGAAAAAACGAAGCAAACGTGCATAA

Upstream 100 bases:

>100_bases
TCAAGTCAGCTTGAAGTCAACGTCAGTTTTTCAGTAATCTGATGACGGATATTCATCCTCATTCAGGGACTTTTCTCTGT
AGGAATTGTTGGGGTTCATC

Downstream 100 bases:

>100_bases
GCAGGGTAATAACGAGAGGCAAACTATTTGTTCATTTCTGCAAAGCTTTATGGGGGGAACAGCGTTAACATCAACCTCTT
CATGAACATCAGTACATTAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKLLDIGEVAKVSGVSPSALRYYEETGLISPVARRGLRRQYSPDVLLRLNLIIMGKAANFSLDEIAGMFSRDGKPEISRA
LCSAKALELNEKINDLTALRDTLLHVASCPALSHMDCPTFRRLAGIAGKRHRGQKKRSKRA

Sequences:

>Translated_141_residues
MKLLDIGEVAKVSGVSPSALRYYEETGLISPVARRGLRRQYSPDVLLRLNLIIMGKAANFSLDEIAGMFSRDGKPEISRA
LCSAKALELNEKINDLTALRDTLLHVASCPALSHMDCPTFRRLAGIAGKRHRGQKKRSKRA
>Mature_141_residues
MKLLDIGEVAKVSGVSPSALRYYEETGLISPVARRGLRRQYSPDVLLRLNLIIMGKAANFSLDEIAGMFSRDGKPEISRA
LCSAKALELNEKINDLTALRDTLLHVASCPALSHMDCPTFRRLAGIAGKRHRGQKKRSKRA

Specific function: Copper responsive transcription regulator [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=133, Percent_Identity=30.8270676691729, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1790498, Length=121, Percent_Identity=37.1900826446281, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011789
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 15560; Mature: 15560

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLDIGEVAKVSGVSPSALRYYEETGLISPVARRGLRRQYSPDVLLRLNLIIMGKAANF
CCCCCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
SLDEIAGMFSRDGKPEISRALCSAKALELNEKINDLTALRDTLLHVASCPALSHMDCPTF
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
RRLAGIAGKRHRGQKKRSKRA
HHHHHHHCHHHCCHHHHCCCC
>Mature Secondary Structure
MKLLDIGEVAKVSGVSPSALRYYEETGLISPVARRGLRRQYSPDVLLRLNLIIMGKAANF
CCCCCCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEEEEEEECCCCC
SLDEIAGMFSRDGKPEISRALCSAKALELNEKINDLTALRDTLLHVASCPALSHMDCPTF
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
RRLAGIAGKRHRGQKKRSKRA
HHHHHHHCHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]