BacMap

Definition	Enterobacter sp. 638 plasmid pENTE01, complete sequence.
Accession	NC_009425
Length	157,749

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The map label for this gene is lolD [H]

Identifier: 146284561

GI number: 146284561

Start: 47557

End: 48243

Strand: Reverse

Name: lolD [H]

Synonym: Ent638_4235

Alternate gene names: 146284561

Gene position: 48243-47557 (Counterclockwise)

Preceding gene: 146284562

Following gene: 146284560

Centisome position: 30.58

GC content: 63.17

Gene sequence:

>687_bases
ATGCTCCACATTCGCGATATGGACATCCGCCGTGGGGGAGCGCAGGGCTTCTACGTCTCGCTGCCGGCGTTAACGCTCCG
CCCCGGTGAAGTGGCGGCGCTGACCGGCCCCAGCGGCTGCGGCAAAAGCACGCTGCTGGAAATGACCGGGGCGATTCTGC
GCCCCGGCACCCTCGGTGCCTATCAACTGGGCGAGCGTGACATTGCCGCCCCGCTGCTGGCCGAAGACGAACCTGCGCTG
GCCGCTATTCGCGCCCGCGATTTGGGTTTTATGCTGCAACATGGTGGGCTGCTGCCGTGGCTGTCGGTGATGGAAAATAT
CACCCTGGCGCGACGGCTGGCAGGCCTCACCACCCAATCCTCTTGGCTGGAGACGGCCATCGACACCCTTGGCGTGCGCC
ACCTGCTGAAAAGCCTGCCTTCCCGGCTCTCCATTGGTGAACGACAGCGCGTGGCGTTTATTCGCGCCATCGCCCATCAA
CCGCGCCTGCTGCTGGCGGATGAACCCACCGCCGCGCTGGATCCAGACAACGCCAGCCGCCTGTTTGCACTGATCGTTGA
CATGGTGCGGACTCTGGAGATGACCGCGATCGTCGTCAGCCATGACTGGCAGCGTGTTGAACAATTCGGCCTTCAACGTT
ACACCGCAAGCATTGAGGAGGGGAAAAGTGTCTTCCTACCCGGTTGA

Upstream 100 bases:

>100_bases
ACCAGCGCTACAACGAAGATGCTGATCGCTGGATCGCGCTGGCGCCTGACAGTGACCCGCGGGATAACGTCTACCCGGTT
CCGCTGGAGAACCTGCCCTG

Downstream 100 bases:

>100_bases
CAGGCCCTCTGAACGCGGCCTGCTCTGGCGCATGGCACTGCGCGATCTGGTCCACGATCGCAAAGTCGCCCTGTGCATTA
TCTTTTCGCTAATTGCCGTG

Product: ABC transporter related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLHIRDMDIRRGGAQGFYVSLPALTLRPGEVAALTGPSGCGKSTLLEMTGAILRPGTLGAYQLGERDIAAPLLAEDEPAL
AAIRARDLGFMLQHGGLLPWLSVMENITLARRLAGLTTQSSWLETAIDTLGVRHLLKSLPSRLSIGERQRVAFIRAIAHQ
PRLLLADEPTAALDPDNASRLFALIVDMVRTLEMTAIVVSHDWQRVEQFGLQRYTASIEEGKSVFLPG

Sequences:

>Translated_228_residues
MLHIRDMDIRRGGAQGFYVSLPALTLRPGEVAALTGPSGCGKSTLLEMTGAILRPGTLGAYQLGERDIAAPLLAEDEPAL
AAIRARDLGFMLQHGGLLPWLSVMENITLARRLAGLTTQSSWLETAIDTLGVRHLLKSLPSRLSIGERQRVAFIRAIAHQ
PRLLLADEPTAALDPDNASRLFALIVDMVRTLEMTAIVVSHDWQRVEQFGLQRYTASIEEGKSVFLPG
>Mature_228_residues
MLHIRDMDIRRGGAQGFYVSLPALTLRPGEVAALTGPSGCGKSTLLEMTGAILRPGTLGAYQLGERDIAAPLLAEDEPAL
AAIRARDLGFMLQHGGLLPWLSVMENITLARRLAGLTTQSSWLETAIDTLGVRHLLKSLPSRLSIGERQRVAFIRAIAHQ
PRLLLADEPTAALDPDNASRLFALIVDMVRTLEMTAIVVSHDWQRVEQFGLQRYTASIEEGKSVFLPG

Specific function: Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-de

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=182, Percent_Identity=26.3736263736264, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI27477115, Length=214, Percent_Identity=25.7009345794392, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1786703, Length=183, Percent_Identity=38.7978142076503, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87081834, Length=208, Percent_Identity=33.1730769230769, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1787105, Length=207, Percent_Identity=34.2995169082126, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI87081791, Length=206, Percent_Identity=33.0097087378641, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1786563, Length=182, Percent_Identity=33.5164835164835, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786872, Length=197, Percent_Identity=33.502538071066, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1788225, Length=187, Percent_Identity=33.6898395721925, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789672, Length=183, Percent_Identity=30.0546448087432, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789032, Length=195, Percent_Identity=31.2820512820513, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787089, Length=207, Percent_Identity=32.8502415458937, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789873, Length=179, Percent_Identity=34.6368715083799, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87082267, Length=181, Percent_Identity=33.7016574585635, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1786398, Length=191, Percent_Identity=31.9371727748691, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788761, Length=186, Percent_Identity=31.7204301075269, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786253, Length=191, Percent_Identity=31.9371727748691, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790544, Length=193, Percent_Identity=34.1968911917098, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787029, Length=184, Percent_Identity=30.9782608695652, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=33.0188679245283, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081709, Length=181, Percent_Identity=27.0718232044199, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787370, Length=222, Percent_Identity=29.7297297297297, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787712, Length=184, Percent_Identity=28.2608695652174, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787792, Length=188, Percent_Identity=30.8510638297872, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788053, Length=187, Percent_Identity=32.620320855615, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=27.0531400966184, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787758, Length=181, Percent_Identity=29.8342541436464, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788450, Length=188, Percent_Identity=32.4468085106383, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1790162, Length=198, Percent_Identity=30.3030303030303, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994943, Length=213, Percent_Identity=27.2300469483568, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789586, Length=210, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994883, Length=214, Percent_Identity=27.5700934579439, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788165, Length=184, Percent_Identity=29.3478260869565, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081782, Length=166, Percent_Identity=29.5180722891566, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788506, Length=217, Percent_Identity=29.9539170506912, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994997, Length=199, Percent_Identity=32.1608040201005, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693107, Length=198, Percent_Identity=31.8181818181818, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789962, Length=193, Percent_Identity=26.4248704663212, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1787548, Length=233, Percent_Identity=26.6094420600858, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790739, Length=198, Percent_Identity=29.2929292929293, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789593, Length=177, Percent_Identity=28.2485875706215, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790190, Length=191, Percent_Identity=25.6544502617801, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788897, Length=196, Percent_Identity=31.6326530612245, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789991, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789864, Length=223, Percent_Identity=25.5605381165919, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789891, Length=193, Percent_Identity=30.5699481865285, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788644, Length=212, Percent_Identity=31.6037735849057, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=214, Percent_Identity=29.9065420560748, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789963, Length=187, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786345, Length=195, Percent_Identity=30.2564102564103, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=213, Percent_Identity=29.5774647887324, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=188, Percent_Identity=27.1276595744681, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=207, Percent_Identity=29.951690821256, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582014, Length=193, Percent_Identity=28.4974093264249, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24582012, Length=193, Percent_Identity=28.4974093264249, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI161076682, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24650855, Length=224, Percent_Identity=27.6785714285714, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076684, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581617, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24581615, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650853, Length=224, Percent_Identity=27.6785714285714, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24653245, Length=171, Percent_Identity=30.4093567251462, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI281363262, Length=171, Percent_Identity=30.4093567251462, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015854
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24828; Mature: 24828

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHIRDMDIRRGGAQGFYVSLPALTLRPGEVAALTGPSGCGKSTLLEMTGAILRPGTLGA
CCEECCCCCCCCCCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCH
YQLGERDIAAPLLAEDEPALAAIRARDLGFMLQHGGLLPWLSVMENITLARRLAGLTTQS
HHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH
SWLETAIDTLGVRHLLKSLPSRLSIGERQRVAFIRAIAHQPRLLLADEPTAALDPDNASR
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH
LFALIVDMVRTLEMTAIVVSHDWQRVEQFGLQRYTASIEEGKSVFLPG
HHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure
MLHIRDMDIRRGGAQGFYVSLPALTLRPGEVAALTGPSGCGKSTLLEMTGAILRPGTLGA
CCEECCCCCCCCCCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCH
YQLGERDIAAPLLAEDEPALAAIRARDLGFMLQHGGLLPWLSVMENITLARRLAGLTTQS
HHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCH
SWLETAIDTLGVRHLLKSLPSRLSIGERQRVAFIRAIAHQPRLLLADEPTAALDPDNASR
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH
LFALIVDMVRTLEMTAIVVSHDWQRVEQFGLQRYTASIEEGKSVFLPG
HHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA