Definition Aeropyrum pernix K1, complete genome.
Accession NC_000854
Length 1,669,696

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The map label for this gene is rpoB

Identifier: 14601675

GI number:

Start: 1172360

End: 1175869

Strand: Reverse

Name: rpoB

Synonym: APE_1856

Alternate gene names: NA

Gene position: NA

Preceding gene: 14601676

Following gene: 118431618

Centisome position: NA

GC content: NA

Gene sequence:

>3510_bases
GTGTCTAACAAGGGGGGAGGTCAGCGTAGCGGAGAAATAGGTGTGGACGAGCTTTGGACGGTGTATAAGTCGTTTATCAG
GGAAACCGGCCTTGCTAGGCAGCATCTAGACTCTTTCAACAGGCTTGTTACGCAGGAGATACAGAAGATAATCGACAGTA
TTAGGGAGGTCAGGCCGCAGTGGAGGATCTATGCGGGTAGAAGGAGGTATAGGCGTGGAAGGTTTGAGGAGCACGAGATT
CATCTTCCCGACGTGAAGATTGTATTTGGGAAGGCTAGGTTTAAGGAGCCTATGGCAAGGGAGGTCATAGAGAGTTTCGA
CAGGCGTGTCACACCCTTCGAGTGCCGTGTGAGGGGGATAACCTACTCTGCACCTCTGATGGTGGAGATGACTATAGTGC
AGGATAACATGATAGAGAAGACACGTGAGGTTAAGATAGCCGACTTCCCGGTTATGGTGAAGAGCGTTCTAGACCCTCTA
TCCAAGTACGATGAGGAAACTGTTATAGAGATGGGTGAGGACCCCGGAGATCCCGGCGGCTACTTCATAATAAACGGGAG
CGAAAAAGTCATAGTTGCCCAGGAGGATCTAGCGGTAAACAGGATTATAGTTAACAAGAGCACAGCAGCTACCGCCAGAA
TTACGCATACCGCTAAGGCAGTCTCAACAGTTCTAGGACTTAGGAGGCAAGCCATAGTGGATAGGATGAGCGACGGCACA
CTCGAGGCCAGTCTAAGCAGGCTGAGGTATAGGATACCCCTTGTGGTTCTCCTAAGGGCCCTAGGGTTGGAAAAGGATAT
GGAGATAATGCTTGCTGTCAGCGCTGATCCGGATGTGCAGAGGGAGATGTTACCCAGCCTTGAGAAGGGTAGGGCTCTCG
CACCCACTAAAGAGGACGCCCTCAAATACCTGGGCAATAGGATAGCCCCGGGACAGCCGCTGGATGTTAGGATAAGAAGG
GCAGAGGAGTTCCTGGACACGCAGCTGCTGCCCCACCTTGGCAACAGGCCTGAGGACAGGATAAAGAAGGCGTACTTCCT
GGCTGAGATGGCTAACAGGGTTCTACAACTGTATCTAGGTAAGAGGGGCGAGGATGATAAAGACTTCCTCGGCAATAAGA
GGCTGAGGCTGGCAGGCGATCTTATAGCAGAGCTATTCAGAGAATCCCTAGAGGCTCTGGCGAATACTATGGCCCAGAAG
CTCGAGGAGCAGCTGGCCGAGAGGAGGCAAATAAGGCTGGACTTCCTCGTCAGACCAACCATAATAAGTGACAGGCTCAA
GGGCGCCATAGCCACTGGCAACTGGGGTCAGGACCGTACTGGTATAAGCCAGCAGTTGGATAGGACAAACTGGATAAGCC
TGCTCAGCCATCTTAGGAGGGTTATATCGCCTCTAAGCAGAGGTCAGGCCCACTTCGAGGCGAGAGACCTCCACGGCTCC
CACTGGGGGCGCTACTGCCCCTTCGAGACTCCTGAGGGCATAAACTGTGGTCTTGTGAAGAACCTTGCACTTTCAGCCTA
CATATCTGTCGGTGTGGATGAGTCTGTTGTTGAGGAGATCCTCGTTAAGGACCTGGGAGTGGCGCCTCTAGAGAGAATCC
TGGAAGAGGCGAAACAGGCGGGCGAGCCGCCGGAGATAATGTTGAAGGGTACCAAGGTTTTCATAAATGGGAGGCCTCTC
GGCTATCACCCTAACGGTGCTGAGCTTGCGAGGAAGATTAGGGAGCTTAGGAGGAGTGACAAGCTCGAGGTTGAGAGGCC
TTGGGAGGTTAGCGTATATCACCTGAGAGAGGGCGAGATAGACGAGCTTTACGTAAACACCGACTCCGGCAGGCTCATGA
GGCCTGTTGTAGTGGTTGAGAACGGGGAGCCTAAGCTTACCAGGGAACATGTGGAGAAGCTGTCGAGAGGCGAAATAACG
TTCTGGGATCTCGTTAAACAGGGAGTAGTGGAGATGCTGGACCCCGAGGAGGAGCAGAACGCGTTAATAGCTGAGCTGCC
CTGGGAGGTCACTAAGGAGCATACCCACATGGAGCTATGGGTGCCAGCGATAGTTGGTGTCGCTGCAGCCACCATTGGGT
ACCTGGAGCACAACCAGAGCCCGAGGAACACCTACCAGGCTGCTATGGCTAAGCAGGCCCTCGGTGTCTACGCTCTAAAC
TATAGGATAAGGCTTGACAGCCACTCATACCTGCTTCAGTACCCGCAGGTACCTATAGTCCAGACTAGGATGCTGGACAT
AATGGGCTATAACGAGAGGCCGGCCGGGCAGAATATGGTAGTCGCTATAATGTCATACACGGGATACAACATTGAGGACG
CGCTGATATTCAACAAGGGATCGATAGACATGGGACTGGCGAGGGCCTACTTCTTCCGTGTATACACTGGAATAGAGAAT
GAGTATCCCGGCGGCGAGAGAGACAGGATAACCCTGCCGAAGCCTGACGAGGTTTACGACTATAGGGGTGCAGCGGCATA
CGCGAAGCTAGAGGCCGATGGAATAGTAGCCCCCGAAACCGAGGTTGAGGGCGGCGAGATCCTGATAGGCAGGGTAAGCC
CGCCCAGGTTCCTCGGCGAAGGCAGGGTTATATCGATGGCTACCGTTAGGAGGCGTGACACAAGCATACCGATGAGGCTG
GGTGAGAAGGGGGTTGTTGATATGGTTGTCATATCCACAACAGTCGAGAGGAATAAGCTAGTGAAGGTCAGGGTTAGAAA
CCTGAGGATACCAGAGATAGGGGACAAGTTCGCCAGCAGGCACGGGCAGAAGGGGGTTATAGGCATGATATTCCCGAGGT
ATGACATGCCATACACGGAGGAGGGTATAGAGCCCGACGTTATACTTAACCCGCACGCCATACCCTCTAGGATGACTGTC
GGCCAGCTTCTAGAGGAGATCGCTGGAAAGCTCGGAGCTATTAAGGGCAGATTCGTGGATGCCACCCCCTTCTTTAAGGA
GGATATAGATGGACTGAGGATAGAGCTGTTGAAGGAGGGCTACGATCCGAACGCGAGGGAGGTTATGTACGACGGTAGGA
CAGGGCAGATTATAGAGGCACCGATAACAATCGGTGTCGCATACTATCAGAGACTTTATCACATGGTTGCAGACAAGATC
CACGCAAGGGCTACTGGAAGGGTGCATCTATTGACTAGGCAGCCTACCGAGGGTAAGGCCCGTCAGGGAGGCCTCAGGTT
CGGAGAGATGGAGAGGGACTGTTTGGTGGGCCATGGAGCCTCCATGCTGCTTAGGGACAGGATGCTGGACAACAGCGACG
CGTACGTGATGTACGTGTGTAACACTTGTGGGAATATAGCGTGGTTTAACAGGAGGAAGAAAGTGCTCGAATGCCCCATA
CATGGAGAGGAGGGTGACATCAGGCCTGTCAAAGTACCCTACGCGTTCAAACTGCTGCTGCAGGAGATAACCAGTATGAT
GATAAAGCCGGAACTCAAGGTAGCCGACAAGATATCCGTCATCAGAAAAGTCGTCGGCGACTATACATGA

Upstream 100 bases:

>100_bases
AAGCCGGGGGATATTATCGAGATAACTAGGCGCAGCTACACGGCTGGCGAGGCGAAGTACTATAGGTTTGTAGTGGCCTA
CCAGAAGGGGGTGAAGTAGT

Downstream 100 bases:

>100_bases
TTACCCCATTTTAATTCTCGGATTTCGGGGGTGTTGGGTGCTATGTCTCTAAGGCTCTCGGAGTTCCGCGAGACAAACCT
TCTAGATAAGATACTCTTTG

Product: DNA-directed RNA polymerase subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1169_residues
MSNKGGGQRSGEIGVDELWTVYKSFIRETGLARQHLDSFNRLVTQEIQKIIDSIREVRPQWRIYAGRRRYRRGRFEEHEI
HLPDVKIVFGKARFKEPMAREVIESFDRRVTPFECRVRGITYSAPLMVEMTIVQDNMIEKTREVKIADFPVMVKSVLDPL
SKYDEETVIEMGEDPGDPGGYFIINGSEKVIVAQEDLAVNRIIVNKSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGT
LEASLSRLRYRIPLVVLLRALGLEKDMEIMLAVSADPDVQREMLPSLEKGRALAPTKEDALKYLGNRIAPGQPLDVRIRR
AEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQLYLGKRGEDDKDFLGNKRLRLAGDLIAELFRESLEALANTMAQK
LEEQLAERRQIRLDFLVRPTIISDRLKGAIATGNWGQDRTGISQQLDRTNWISLLSHLRRVISPLSRGQAHFEARDLHGS
HWGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEILVKDLGVAPLERILEEAKQAGEPPEIMLKGTKVFINGRPL
GYHPNGAELARKIRELRRSDKLEVERPWEVSVYHLREGEIDELYVNTDSGRLMRPVVVVENGEPKLTREHVEKLSRGEIT
FWDLVKQGVVEMLDPEEEQNALIAELPWEVTKEHTHMELWVPAIVGVAAATIGYLEHNQSPRNTYQAAMAKQALGVYALN
YRIRLDSHSYLLQYPQVPIVQTRMLDIMGYNERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTGIEN
EYPGGERDRITLPKPDEVYDYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSPPRFLGEGRVISMATVRRRDTSIPMRL
GEKGVVDMVVISTTVERNKLVKVRVRNLRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTV
GQLLEEIAGKLGAIKGRFVDATPFFKEDIDGLRIELLKEGYDPNAREVMYDGRTGQIIEAPITIGVAYYQRLYHMVADKI
HARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGASMLLRDRMLDNSDAYVMYVCNTCGNIAWFNRRKKVLECPI
HGEEGDIRPVKVPYAFKLLLQEITSMMIKPELKVADKISVIRKVVGDYT

Sequences:
NA

Specific function: NA

COG id: COG0085

COG function: function code K; DNA-directed RNA polymerase, beta subunit/140 kD subunit

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA