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The map label for this gene is radC [C]

Identifier: 145301518

GI number: 145301518

Start: 134595

End: 135485

Strand: Reverse

Name: radC [C]

Synonym: ASA_P5G141

Alternate gene names: 145301518

Gene position: 135485-134595 (Counterclockwise)

Preceding gene: 145301526

Following gene: 145301515

Centisome position: 87.35

GC content: 53.65

Gene sequence:

>891_bases
TTGTGGTACGGGATTGGCCTGGACCCAAAAAACAGGATTGCCTGTATGTTCACTGAAAGAGAAAAACGGATTATCGCGCT
GGCGCACAGCATTATTGCTCGCCGCTTCACTCGACTGGACTCACTGAACAGCCCCGAGATGGTGGTCGAGTATTTGAAAA
CCCGCTTCGCCACACTGGAACATGAAACCTTTGCCATGATCCTGTTGGACAATCAGCACCGCGTTATCAACGCCGTTGAC
CTTAGCCACGGCACGATTGATTCCGCCGCCGTGTATCCGCGCGAAGTCGTCAAAACCGCACTGAAACATAACGCCGCTGC
CGTGATACTGGCTCACAATCATCCGTCCGGTGTCGCAGAGCCAAGCCGTGCAGATCGCCAAATCACCGAGCGACTGCAAG
CCGCGCTGGATCTCGTTGATATTCGGGTGCTGGATCATATTGTGGTCGCCGGTGAAAACAGCATGTCATTTGCAGTGCGG
GGATTCAATTTAAACACTGCGCCCCTGACGGGGCGCTGGAGCCTTATCATGTCTGAACATAAAGCTATCTACGATGTCAC
TGGCCTGGATTGTTCTATCGAGGAATTCAAAATGCGGCCCTGTGTCCGACACCGCTATTCGCCTGAATTTGTGCTGCCTA
CGCCGGATGAAATCAAGTTTGTCCGTACTGCCTTGTTAGGCTGGCCACAAACCAAGCTAGGGGCGTTTTTGGGCTATCCC
ATCGATCCAAAAGGTTGCCCGACAGTCAGGCGCTGGGAGCGCCCTGTTGATACAAACAATCATCGCGCTATTGAATACAA
CGCCTGGCGGCGCATCTTGCTGGCGGCGGGCGTGATTGAGGGGGTGGAGGATCTACAGATCGCCGACCGATATCTCGAGT
TTATTGGGTAA

Upstream 100 bases:

>100_bases
TAACGTGAAATAAAAAATAGGCGGGATACCCGCCTATTACATTTATTTTCTTATTAAGGTGAAAATGCTTTAACCGTCCC
AGTGGTATGGTATAATTGTT

Downstream 100 bases:

>100_bases
ACGACCATGGTGACATTCGACTATCGGAGCGGCATTTTGGAAGCTGCTGATACCAAGACTGGCTATGAATGGTGTTGGTT
TAAAGGGGACTCGGAGATAA

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MWYGIGLDPKNRIACMFTEREKRIIALAHSIIARRFTRLDSLNSPEMVVEYLKTRFATLEHETFAMILLDNQHRVINAVD
LSHGTIDSAAVYPREVVKTALKHNAAAVILAHNHPSGVAEPSRADRQITERLQAALDLVDIRVLDHIVVAGENSMSFAVR
GFNLNTAPLTGRWSLIMSEHKAIYDVTGLDCSIEEFKMRPCVRHRYSPEFVLPTPDEIKFVRTALLGWPQTKLGAFLGYP
IDPKGCPTVRRWERPVDTNNHRAIEYNAWRRILLAAGVIEGVEDLQIADRYLEFIG

Sequences:

>Translated_296_residues
MWYGIGLDPKNRIACMFTEREKRIIALAHSIIARRFTRLDSLNSPEMVVEYLKTRFATLEHETFAMILLDNQHRVINAVD
LSHGTIDSAAVYPREVVKTALKHNAAAVILAHNHPSGVAEPSRADRQITERLQAALDLVDIRVLDHIVVAGENSMSFAVR
GFNLNTAPLTGRWSLIMSEHKAIYDVTGLDCSIEEFKMRPCVRHRYSPEFVLPTPDEIKFVRTALLGWPQTKLGAFLGYP
IDPKGCPTVRRWERPVDTNNHRAIEYNAWRRILLAAGVIEGVEDLQIADRYLEFIG
>Mature_296_residues
MWYGIGLDPKNRIACMFTEREKRIIALAHSIIARRFTRLDSLNSPEMVVEYLKTRFATLEHETFAMILLDNQHRVINAVD
LSHGTIDSAAVYPREVVKTALKHNAAAVILAHNHPSGVAEPSRADRQITERLQAALDLVDIRVLDHIVVAGENSMSFAVR
GFNLNTAPLTGRWSLIMSEHKAIYDVTGLDCSIEEFKMRPCVRHRYSPEFVLPTPDEIKFVRTALLGWPQTKLGAFLGYP
IDPKGCPTVRRWERPVDTNNHRAIEYNAWRRILLAAGVIEGVEDLQIADRYLEFIG

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=140, Percent_Identity=47.8571428571429, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=48.936170212766, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1788997, Length=143, Percent_Identity=47.5524475524476, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=51.6393442622951, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 33565; Mature: 33565

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYGIGLDPKNRIACMFTEREKRIIALAHSIIARRFTRLDSLNSPEMVVEYLKTRFATLE
CEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
HETFAMILLDNQHRVINAVDLSHGTIDSAAVYPREVVKTALKHNAAAVILAHNHPSGVAE
CCEEEEEEECCCCCEEEEEECCCCCCCCHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PSRADRQITERLQAALDLVDIRVLDHIVVAGENSMSFAVRGFNLNTAPLTGRWSLIMSEH
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCHHEEECCC
KAIYDVTGLDCSIEEFKMRPCVRHRYSPEFVLPTPDEIKFVRTALLGWPQTKLGAFLGYP
CEEEEECCCCCCHHHHHCCHHHHHCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHCCC
IDPKGCPTVRRWERPVDTNNHRAIEYNAWRRILLAAGVIEGVEDLQIADRYLEFIG
CCCCCCCCHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWYGIGLDPKNRIACMFTEREKRIIALAHSIIARRFTRLDSLNSPEMVVEYLKTRFATLE
CEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
HETFAMILLDNQHRVINAVDLSHGTIDSAAVYPREVVKTALKHNAAAVILAHNHPSGVAE
CCEEEEEEECCCCCEEEEEECCCCCCCCHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PSRADRQITERLQAALDLVDIRVLDHIVVAGENSMSFAVRGFNLNTAPLTGRWSLIMSEH
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCHHEEECCC
KAIYDVTGLDCSIEEFKMRPCVRHRYSPEFVLPTPDEIKFVRTALLGWPQTKLGAFLGYP
CEEEEECCCCCCHHHHHCCHHHHHCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHCCC
IDPKGCPTVRRWERPVDTNNHRAIEYNAWRRILLAAGVIEGVEDLQIADRYLEFIG
CCCCCCCCHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA