| Definition | Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, complete sequence. |
|---|---|
| Accession | NC_009350 |
| Length | 155,098 |
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The map label for this gene is traC [H]
Identifier: 145301414
GI number: 145301414
Start: 26405
End: 28990
Strand: Direct
Name: traC [H]
Synonym: ASA_P5G030
Alternate gene names: 145301414
Gene position: 26405-28990 (Clockwise)
Preceding gene: 145301413
Following gene: 145301415
Centisome position: 17.02
GC content: 55.92
Gene sequence:
>2586_bases ATGGATGTTATTACTGCAACCGTTGAGCGCCTTTTGGCGGCCATCAAAAAACCGGTAGGTGCGGTGCAAGCCAATAAGAT ATTGGGCGACCTGCACTATCCCCAGCTATCCAGTATGTTGCCATATCGCTTTTACGATGCCGATAGCGGGCTATACGTGA ACAAAAGCACGGTCGGCTTTATGCTCGAAGCCACCCCCCTCATCGGGGCTAATGAGCACATCGTCCAGGTGCTCGATGAT CTGGTCAAAAGCAAACTGCCACGCAAGGTGCCTATCTCGGTGCATCTGGTGTCGACCAAGGTTATTGGTGACCAGATTGA TCACGGCATTGCCCAATTCAGTTGGCAAGGCAAACATGCCGAGCGCTTTAACCGCATCACGCGGGCCTTTTACCACAGCG CTGCCCATGGCCGGTTCGGCAGCCCCACCAATTTGCCGCTGACCTTGCGCGATTATCGGGTCTATATCTCCTATTGCGCC AAAGCCAAAAAACTCGACAAGACCGCGATTACCGAGCTGAGCCACCTGCTCAAAATTGTTCGCGCATCCCTGGAATCCGC CAAGATCGCCACCGCGCAGGTAGACCAGACGGCATTCGTGAACATCATCAACCAGATGGCCAACCACCGGCCCGAGCAGA TCATCGCCACGCCCAAAAACCTCCAACAGTACGATGAACTCAATTTTCAGTGCCTTGACCGCAGCACCAGTCTCGAAGTG AAACCGGATTATCTGCTGCTAACCCTGGATGCGGGTGATGGCCAAAAATCCCGTGCCCGGATCATGAATTTCATGCTGGA GCAAAACCCGGACCTGTTCATGCTCTGGCAAGGGGGGGATAACATCAGCAACCTGCTCAGCCCCGATCTCTGCGTGGCCA GCCCCTTTGTGCTGACCATGACCCTGGAAGCCGAGGAGCAGGTGTCCACCCAAAACGAAGCCACTCGCAAATTCTTCGAC CTCGATAAAAAGGCCAACTCCCCTTATGGCAAGCTCTTTCCCGGCGTGGGCAAACAGGCCCAGGAGTGGGGGGCGCTGCG GGAAAACCTCAACAGCAATAGCAGCTGTCTGGTGCGCTATTTCTTCAACCTGACCGCATTTTGTCCCGATGATGAAGAGG CGGCCCTCATCTGTGAACAACAGGTGATCAACACCTTCAAGAAAAACGGCCTGCACCTCTACAGCCCGGTTTTCATGCAG ATGCGCAACTACCTGGCCATGTTCCCGTTCTGTGCCGGTGAGGGATTGTGGGATGATCTGAAAGCCTCCGGGGCCACCTC CCGCGCCGAAAGCACTCAGGCGGTCAACCTGCTGCCACTGGTCGCCGATAACCGGCTGTGCCAAAGTGGCCTGCTCGCCC CCTCCTACCGTAACCAATTGGCCTTTCTCGATATTTTCGACACGGGCCTTGGCAACACCAACTACAACATGGCGGTCAGC GGGACCTCCGGGGCCGGTAAAACCGGCCTGGTGCAACCCATCTTGCGCAGTGTGCTCGATTCGGGCGGCTCGGTCTGGGT ATTTGACATGGGGGATGGCTACAAGAGCTTTTGTGAAAACGTCGGCGGGACCTATCTCGACGGCCAGAACCTCAAGTTCA ACCCCTTTGCCAACATCACCAATATTCATGCCTCCGGTGAGCGGATCCGTGATCAGCTGTCGGTACTGGCCAGCCCTAAC GGCAAGCTCGATGAAGTGCATGAAGATCTGTTGCTACGCGGGATCCTCAACGCCTGGAACGTCAAGCAACAAAAAGCCCG TATCGATGATGTGGTGGCGTTTTTAAAAACCGAACGCGACCATGAGCACTATGCCAATTCGGCCTCCATCACCTCGCGCA TGGACGAGATCATCGAGCTGCTCGGCAAATATTGCTCAACCGGTATTTACGGGGAGTTCTTCAACTCAGACAGCCCCTCG CTGACGGACGATGCCAACATGGTGGTGCTCGAGCTCGGTGGCCTGCAGGACAAACCCTCCTTGCTGGTCGCCGTGATGTT CTCGCTCATCATCTATATCGAGGACAAGATGTATCGCTCCGACCGCAGCCTGAAAAAGGTGTGCTGCATCGATGAGGGCT GGAAACTCCTTAACTTCAAAAACGACAAGGTGGGGTCGTTCATCGAAACCGGTTATCGCACCGTGCGCCGTCATACCGGC TCGTTCATCACCATCTCGCAAAACATCAAAGACTTTGATGCCGATGACGCCAGCAGTGCCGCCAAAGCGGCCTGGGGCAA CTCGGCGTTCAAGGTCGTCCTCAAGCAGGATGCGAGCGAGTTCAAGATCTACAACCAGAACCGCCCCAATCAGTTCAGCG AGCTCGAGCGCCTGGCCATCAGCCGCTTTGGCGATGCCAAGGATCAGTGGTTCAGCTCCTTCATGCTGCGCATCAATGAC ACCAGTTCGTTCCACCGGCTGTTTGTCGACCCCCTCTCTCGCGCCATGTTCAGCTCCAACGGCAAGGACTTCGAGTTTCT GCAACAGCGCCGAGCCGAAGGCGTCGACATTCACGACGCGGTCTATGAGCTGGCACTGCTGCGCTTTCCCGACGAGATGG AGGCCCTTGCATCATGGCACCATTAA
Upstream 100 bases:
>100_bases ATTGATGCCTCCGACGTGTTTCACCAGCCCGGACGGGTCTCCTTTGTGGTCACGCCAGGCACCTGGCAGTTACCGCAGCA GTTAAAGTAAGGAGTCTGTT
Downstream 100 bases:
>100_bases TTCCCCCGCCGCCCACGGACAACGCCCCCGCAACCAGCGCCCCCCGCCGCACAGGCAGGGGATGGATGCTGGCACTGGCG GTGCTGACCGCCCTCAACCT
Product: conjugal transfer ATP-binding protein TraC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MDVITATVERLLAAIKKPVGAVQANKILGDLHYPQLSSMLPYRFYDADSGLYVNKSTVGFMLEATPLIGANEHIVQVLDD LVKSKLPRKVPISVHLVSTKVIGDQIDHGIAQFSWQGKHAERFNRITRAFYHSAAHGRFGSPTNLPLTLRDYRVYISYCA KAKKLDKTAITELSHLLKIVRASLESAKIATAQVDQTAFVNIINQMANHRPEQIIATPKNLQQYDELNFQCLDRSTSLEV KPDYLLLTLDAGDGQKSRARIMNFMLEQNPDLFMLWQGGDNISNLLSPDLCVASPFVLTMTLEAEEQVSTQNEATRKFFD LDKKANSPYGKLFPGVGKQAQEWGALRENLNSNSSCLVRYFFNLTAFCPDDEEAALICEQQVINTFKKNGLHLYSPVFMQ MRNYLAMFPFCAGEGLWDDLKASGATSRAESTQAVNLLPLVADNRLCQSGLLAPSYRNQLAFLDIFDTGLGNTNYNMAVS GTSGAGKTGLVQPILRSVLDSGGSVWVFDMGDGYKSFCENVGGTYLDGQNLKFNPFANITNIHASGERIRDQLSVLASPN GKLDEVHEDLLLRGILNAWNVKQQKARIDDVVAFLKTERDHEHYANSASITSRMDEIIELLGKYCSTGIYGEFFNSDSPS LTDDANMVVLELGGLQDKPSLLVAVMFSLIIYIEDKMYRSDRSLKKVCCIDEGWKLLNFKNDKVGSFIETGYRTVRRHTG SFITISQNIKDFDADDASSAAKAAWGNSAFKVVLKQDASEFKIYNQNRPNQFSELERLAISRFGDAKDQWFSSFMLRIND TSSFHRLFVDPLSRAMFSSNGKDFEFLQQRRAEGVDIHDAVYELALLRFPDEMEALASWHH
Sequences:
>Translated_861_residues MDVITATVERLLAAIKKPVGAVQANKILGDLHYPQLSSMLPYRFYDADSGLYVNKSTVGFMLEATPLIGANEHIVQVLDD LVKSKLPRKVPISVHLVSTKVIGDQIDHGIAQFSWQGKHAERFNRITRAFYHSAAHGRFGSPTNLPLTLRDYRVYISYCA KAKKLDKTAITELSHLLKIVRASLESAKIATAQVDQTAFVNIINQMANHRPEQIIATPKNLQQYDELNFQCLDRSTSLEV KPDYLLLTLDAGDGQKSRARIMNFMLEQNPDLFMLWQGGDNISNLLSPDLCVASPFVLTMTLEAEEQVSTQNEATRKFFD LDKKANSPYGKLFPGVGKQAQEWGALRENLNSNSSCLVRYFFNLTAFCPDDEEAALICEQQVINTFKKNGLHLYSPVFMQ MRNYLAMFPFCAGEGLWDDLKASGATSRAESTQAVNLLPLVADNRLCQSGLLAPSYRNQLAFLDIFDTGLGNTNYNMAVS GTSGAGKTGLVQPILRSVLDSGGSVWVFDMGDGYKSFCENVGGTYLDGQNLKFNPFANITNIHASGERIRDQLSVLASPN GKLDEVHEDLLLRGILNAWNVKQQKARIDDVVAFLKTERDHEHYANSASITSRMDEIIELLGKYCSTGIYGEFFNSDSPS LTDDANMVVLELGGLQDKPSLLVAVMFSLIIYIEDKMYRSDRSLKKVCCIDEGWKLLNFKNDKVGSFIETGYRTVRRHTG SFITISQNIKDFDADDASSAAKAAWGNSAFKVVLKQDASEFKIYNQNRPNQFSELERLAISRFGDAKDQWFSSFMLRIND TSSFHRLFVDPLSRAMFSSNGKDFEFLQQRRAEGVDIHDAVYELALLRFPDEMEALASWHH >Mature_861_residues MDVITATVERLLAAIKKPVGAVQANKILGDLHYPQLSSMLPYRFYDADSGLYVNKSTVGFMLEATPLIGANEHIVQVLDD LVKSKLPRKVPISVHLVSTKVIGDQIDHGIAQFSWQGKHAERFNRITRAFYHSAAHGRFGSPTNLPLTLRDYRVYISYCA KAKKLDKTAITELSHLLKIVRASLESAKIATAQVDQTAFVNIINQMANHRPEQIIATPKNLQQYDELNFQCLDRSTSLEV KPDYLLLTLDAGDGQKSRARIMNFMLEQNPDLFMLWQGGDNISNLLSPDLCVASPFVLTMTLEAEEQVSTQNEATRKFFD LDKKANSPYGKLFPGVGKQAQEWGALRENLNSNSSCLVRYFFNLTAFCPDDEEAALICEQQVINTFKKNGLHLYSPVFMQ MRNYLAMFPFCAGEGLWDDLKASGATSRAESTQAVNLLPLVADNRLCQSGLLAPSYRNQLAFLDIFDTGLGNTNYNMAVS GTSGAGKTGLVQPILRSVLDSGGSVWVFDMGDGYKSFCENVGGTYLDGQNLKFNPFANITNIHASGERIRDQLSVLASPN GKLDEVHEDLLLRGILNAWNVKQQKARIDDVVAFLKTERDHEHYANSASITSRMDEIIELLGKYCSTGIYGEFFNSDSPS LTDDANMVVLELGGLQDKPSLLVAVMFSLIIYIEDKMYRSDRSLKKVCCIDEGWKLLNFKNDKVGSFIETGYRTVRRHTG SFITISQNIKDFDADDASSAAKAAWGNSAFKVVLKQDASEFKIYNQNRPNQFSELERLAISRFGDAKDQWFSSFMLRIND TSSFHRLFVDPLSRAMFSSNGKDFEFLQQRRAEGVDIHDAVYELALLRFPDEMEALASWHH
Specific function: Required for the assembly of mature F-pilin subunits into extended F pili [H]
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002789 - InterPro: IPR014117 [H]
Pfam domain/function: PF01935 DUF87 [H]
EC number: NA
Molecular weight: Translated: 96416; Mature: 96416
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVITATVERLLAAIKKPVGAVQANKILGDLHYPQLSSMLPYRFYDADSGLYVNKSTVGF CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCEEEEECCCCEEEECCCEEE MLEATPLIGANEHIVQVLDDLVKSKLPRKVPISVHLVSTKVIGDQIDHGIAQFSWQGKHA EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCHH ERFNRITRAFYHSAAHGRFGSPTNLPLTLRDYRVYISYCAKAKKLDKTAITELSHLLKIV HHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RASLESAKIATAQVDQTAFVNIINQMANHRPEQIIATPKNLQQYDELNFQCLDRSTSLEV HHHHHHHHEEHHHCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCCEEEECCCCCEEE KPDYLLLTLDAGDGQKSRARIMNFMLEQNPDLFMLWQGGDNISNLLSPDLCVASPFVLTM CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHCCCEEEEE TLEAEEQVSTQNEATRKFFDLDKKANSPYGKLFPGVGKQAQEWGALRENLNSNSSCLVRY EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHH FFNLTAFCPDDEEAALICEQQVINTFKKNGLHLYSPVFMQMRNYLAMFPFCAGEGLWDDL HHHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCHHCCCCCHHHH KASGATSRAESTQAVNLLPLVADNRLCQSGLLAPSYRNQLAFLDIFDTGLGNTNYNMAVS HCCCCCCCCCCCCCEEEEEEHHCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEE GTSGAGKTGLVQPILRSVLDSGGSVWVFDMGDGYKSFCENVGGTYLDGQNLKFNPFANIT CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCEECCCCCEECCCCCCE NIHASGERIRDQLSVLASPNGKLDEVHEDLLLRGILNAWNVKQQKARIDDVVAFLKTERD EECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC HEHYANSASITSRMDEIIELLGKYCSTGIYGEFFNSDSPSLTDDANMVVLELGGLQDKPS HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCHH LLVAVMFSLIIYIEDKMYRSDRSLKKVCCIDEGWKLLNFKNDKVGSFIETGYRTVRRHTG HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC SFITISQNIKDFDADDASSAAKAAWGNSAFKVVLKQDASEFKIYNQNRPNQFSELERLAI CEEEEECCCCCCCCCCCHHHHHHHCCCHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHH SRFGDAKDQWFSSFMLRINDTSSFHRLFVDPLSRAMFSSNGKDFEFLQQRRAEGVDIHDA HHCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHH VYELALLRFPDEMEALASWHH HHHHHHHCCCHHHHHHHCCCC >Mature Secondary Structure MDVITATVERLLAAIKKPVGAVQANKILGDLHYPQLSSMLPYRFYDADSGLYVNKSTVGF CCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHCCCEEEEECCCCEEEECCCEEE MLEATPLIGANEHIVQVLDDLVKSKLPRKVPISVHLVSTKVIGDQIDHGIAQFSWQGKHA EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCHH ERFNRITRAFYHSAAHGRFGSPTNLPLTLRDYRVYISYCAKAKKLDKTAITELSHLLKIV HHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RASLESAKIATAQVDQTAFVNIINQMANHRPEQIIATPKNLQQYDELNFQCLDRSTSLEV HHHHHHHHEEHHHCCHHHHHHHHHHHHCCCCCEEECCCHHHHHHHCCCEEEECCCCCEEE KPDYLLLTLDAGDGQKSRARIMNFMLEQNPDLFMLWQGGDNISNLLSPDLCVASPFVLTM CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCHHHCCCEEEEE TLEAEEQVSTQNEATRKFFDLDKKANSPYGKLFPGVGKQAQEWGALRENLNSNSSCLVRY EECCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHH FFNLTAFCPDDEEAALICEQQVINTFKKNGLHLYSPVFMQMRNYLAMFPFCAGEGLWDDL HHHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCHHCCCCCHHHH KASGATSRAESTQAVNLLPLVADNRLCQSGLLAPSYRNQLAFLDIFDTGLGNTNYNMAVS HCCCCCCCCCCCCCEEEEEEHHCCHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEE GTSGAGKTGLVQPILRSVLDSGGSVWVFDMGDGYKSFCENVGGTYLDGQNLKFNPFANIT CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCEECCCCCEECCCCCCE NIHASGERIRDQLSVLASPNGKLDEVHEDLLLRGILNAWNVKQQKARIDDVVAFLKTERD EECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC HEHYANSASITSRMDEIIELLGKYCSTGIYGEFFNSDSPSLTDDANMVVLELGGLQDKPS HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCHH LLVAVMFSLIIYIEDKMYRSDRSLKKVCCIDEGWKLLNFKNDKVGSFIETGYRTVRRHTG HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC SFITISQNIKDFDADDASSAAKAAWGNSAFKVVLKQDASEFKIYNQNRPNQFSELERLAI CEEEEECCCCCCCCCCCHHHHHHHCCCHHEEEEECCCCCCEEEECCCCCCHHHHHHHHHH SRFGDAKDQWFSSFMLRINDTSSFHRLFVDPLSRAMFSSNGKDFEFLQQRRAEGVDIHDA HHCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHH VYELALLRFPDEMEALASWHH HHHHHHHCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2265751; 7915817; 1355084 [H]