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The map label for this gene is yciR [C]

Identifier: 145299889

GI number: 145299889

Start: 3211134

End: 3213554

Strand: Direct

Name: yciR [C]

Synonym: ASA_2981

Alternate gene names: 145299889

Gene position: 3211134-3213554 (Clockwise)

Preceding gene: 145299887

Following gene: 145299895

Centisome position: 68.29

GC content: 60.14

Gene sequence:

>2421_bases
TTGAAGTGGCATCATCAGTTCCAGTTTGCCGGCTACTATGCGGCCATCGCCCAGGGCTATTACCGGGATGCAGGGCTCTA
TGTCAGGCTCAAAGAGGCCGGCCCGGGCACGGATGTGGTCGACGAAGTCGTCTCGGGGCGCGCCCATTATGGAGTCGGCA
GCAGTGACTTGCTGCTGGATCGCCAGCGCGGCCAACCTGTCGTGGTCCTGGCCACCCCGTTTCAACACTCCCCTCTGGTG
CTGCTGGCACGCGCCGATATCGACAACGTGCATGATCTCGTTGGCCGCCGTCTGATGCTGGAATATCACTCCGAAGAGCT
GATCGCCTATCTGCAACACGAAGGGGTTGCACTTGGGTTGCTCCATCGCCAGCCCCATACCCTGAGCGCAGATGCGCTAA
TTCGGGGCGAAGTGGATGCCATGAGCGCCTACAACACGGATGAAACCTACACATTGCAGCGCAGCGGTGTGCCCTATCAG
ACCTTTACTCCCCGCAGCGCCGGTATCGACTTCTACGGTGACAACCTGTTTACCTCCGAGCGTGAATTGCGCGACCACGG
GGCGAGAGTCAGAGCCTTTCGCGAAGCCAGCCTCAAGGGGTGGCGTTACGCCATGCTGCATCCGGAAGAGGTGGTGGCCT
GGATCCTCACCCAATATCCGGCGACCAATAATCCGGCCCTGGACCGCAACAAGCTGCTGTTTGAAGCCAAGCAGATGCAG
CCGCTGATCCGCGCCGATCTGGTGGAGATGGGCTACATGTATCCCGGCCGCTGGCAACACATAGCGCAAACCTATATGGA
CCTCGGCCTGCTCACTGCCATGCCGGATCTGGATAGTTTCCTCTACAGCCAGCAGGAAGAGAGAGCACATCAACAGCAGT
TGATGATCTATCAGGGCATCGCCATCGGCCTGCTGGTCACCGCCTTCCTATTGATATTGCTTATGATCTTCCTTCGTCTC
AACCGCCGTCTGCGGGAAGAGAGCAAGGCACGCCATCAGCTAAGCCAGGAGATAGCCGACAACGAGCGCCACTTCCGCTT
CATCACGGAGAACAGTGCCGACGTCATCTGGACCATGGATATCCAGAGTGGTCGCTTCACCTACCTGAGCCCGTCGGTGC
AGCACCTGCGTGGTTTCACCGTCGAGGAGGTGCTGGCCCAGACGGGCGAGGAGCTGATGACGGCTGAATCTGCCAACCGC
ATCGCCCGCCAGATGAAGGAGTCGCTGGCAACCTGGGCGGCGGGGGATCACATCAATACCAAGCGAGTCACCCTGGTGGA
TCAGCCTCACAAGGATGGGCACCTCATCCACACAGAAGTGGTCACCACGCTGCATGCCGACAAGGATGGCAACCCCGTCT
CTGTGCTCGGCGTAACCCGGGACATCAGCGATCGCAAAGCCAGCGAGGAGATGATGCGCCAGCTCGCTTTTTATGATCCC
CTCACTCACCTGCCCAACCGTCGTCTGCTACAAGACAGGCTGCAACATTCACTGCAACAGGCGGACGGAAAGCCGCTGGC
CCTGCTGTTCATCGATCTCGACCACTTCAAGCCGGTCAACGATCAGCATGGGCACGAGGCAGGCGACTGGCTGCTGGCCA
CCGTCGCCAAGCGCATGCTGCACTGTGTGCGGGAGGGGGACACGGTCGCCCGGATCGGCGGGGATGAATTCATGGTGCTG
CTGCCCGAGATAACGGGAGAGGCGGGGGCCATCGCCATCGCCGAGGCCATCCACCAGAGTCTCAACCAGACCTTTGCCAT
GACGGATGCGCTCCATTTCCATATCTCCAGCTGCATCGGTGTGGCCCTCTATCCGCAGCACGGCACCACCCAGAAGCAGT
TGATGAATCACGGCGATCAGGCCATGTATCAGGCCAAGGAGGCGGGGCGCAACCGCATCCAGCTGTTCACGCCCCAGATG
GCGGGCGGGATCACGCAAGAGGCAGTCCACCAGATACAGCTGGGCTGGAAACAGAGCCACGACTGCGGCCACCCGCAGAT
CGATGATGACCATCGCCAGCTGTTTGCCCTGGCCAATCAGTTGCTCAACGGTGTGCTGACCATGGAAGAGGATACAGACC
AGTTTCATCAAAACTTCGAGGCCCTGCTGGCCCTGGCCGCCAGCCACTTCAACAACGAAGAGGCCATTCTGGCCAAGCTG
GAGTACGCCGAGCTGGACACTCACCGTCAGGAGCATCAAAAGCTGCTCCGTCGGGCCAACAGCCTCTATCAGGCGGCCCG
CACTGGCGAGCTGACCAATCTTGCTCTACTGGATTTTGTTCTGCAGGATCTGGTGCTGGGCCACATGGTCAAGCAGGACA
GACGCTATTTCCCGCTGCTGAAGGCCAGCATGCAGGAAGAGACCCTCCTCTCGCCCGATGGCCCCCTCACCTCTCCCCCG
CCCGGTCTGGTGAAACACTGA

Upstream 100 bases:

>100_bases
CGCGGGCCGGCATATTGGCCCTTTGCTCATGCCGTTGCTGCTGATCATACTGGCCTGTCTGCCGGCCAGGGTCGCGGCAC
AGGATCCGATTGTTTTACAG

Downstream 100 bases:

>100_bases
ACCTTGCTGTCTCACGCCAGCACTGGCCGCGCCCTGCTCCCGTCAAACACGCGGTGCCATCAGGCTATAGTAGAGCAGCG
GTATTACGACCAGGGTGAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 806; Mature: 806

Protein sequence:

>806_residues
MKWHHQFQFAGYYAAIAQGYYRDAGLYVRLKEAGPGTDVVDEVVSGRAHYGVGSSDLLLDRQRGQPVVVLATPFQHSPLV
LLARADIDNVHDLVGRRLMLEYHSEELIAYLQHEGVALGLLHRQPHTLSADALIRGEVDAMSAYNTDETYTLQRSGVPYQ
TFTPRSAGIDFYGDNLFTSERELRDHGARVRAFREASLKGWRYAMLHPEEVVAWILTQYPATNNPALDRNKLLFEAKQMQ
PLIRADLVEMGYMYPGRWQHIAQTYMDLGLLTAMPDLDSFLYSQQEERAHQQQLMIYQGIAIGLLVTAFLLILLMIFLRL
NRRLREESKARHQLSQEIADNERHFRFITENSADVIWTMDIQSGRFTYLSPSVQHLRGFTVEEVLAQTGEELMTAESANR
IARQMKESLATWAAGDHINTKRVTLVDQPHKDGHLIHTEVVTTLHADKDGNPVSVLGVTRDISDRKASEEMMRQLAFYDP
LTHLPNRRLLQDRLQHSLQQADGKPLALLFIDLDHFKPVNDQHGHEAGDWLLATVAKRMLHCVREGDTVARIGGDEFMVL
LPEITGEAGAIAIAEAIHQSLNQTFAMTDALHFHISSCIGVALYPQHGTTQKQLMNHGDQAMYQAKEAGRNRIQLFTPQM
AGGITQEAVHQIQLGWKQSHDCGHPQIDDDHRQLFALANQLLNGVLTMEEDTDQFHQNFEALLALAASHFNNEEAILAKL
EYAELDTHRQEHQKLLRRANSLYQAARTGELTNLALLDFVLQDLVLGHMVKQDRRYFPLLKASMQEETLLSPDGPLTSPP
PGLVKH

Sequences:

>Translated_806_residues
MKWHHQFQFAGYYAAIAQGYYRDAGLYVRLKEAGPGTDVVDEVVSGRAHYGVGSSDLLLDRQRGQPVVVLATPFQHSPLV
LLARADIDNVHDLVGRRLMLEYHSEELIAYLQHEGVALGLLHRQPHTLSADALIRGEVDAMSAYNTDETYTLQRSGVPYQ
TFTPRSAGIDFYGDNLFTSERELRDHGARVRAFREASLKGWRYAMLHPEEVVAWILTQYPATNNPALDRNKLLFEAKQMQ
PLIRADLVEMGYMYPGRWQHIAQTYMDLGLLTAMPDLDSFLYSQQEERAHQQQLMIYQGIAIGLLVTAFLLILLMIFLRL
NRRLREESKARHQLSQEIADNERHFRFITENSADVIWTMDIQSGRFTYLSPSVQHLRGFTVEEVLAQTGEELMTAESANR
IARQMKESLATWAAGDHINTKRVTLVDQPHKDGHLIHTEVVTTLHADKDGNPVSVLGVTRDISDRKASEEMMRQLAFYDP
LTHLPNRRLLQDRLQHSLQQADGKPLALLFIDLDHFKPVNDQHGHEAGDWLLATVAKRMLHCVREGDTVARIGGDEFMVL
LPEITGEAGAIAIAEAIHQSLNQTFAMTDALHFHISSCIGVALYPQHGTTQKQLMNHGDQAMYQAKEAGRNRIQLFTPQM
AGGITQEAVHQIQLGWKQSHDCGHPQIDDDHRQLFALANQLLNGVLTMEEDTDQFHQNFEALLALAASHFNNEEAILAKL
EYAELDTHRQEHQKLLRRANSLYQAARTGELTNLALLDFVLQDLVLGHMVKQDRRYFPLLKASMQEETLLSPDGPLTSPP
PGLVKH
>Mature_806_residues
MKWHHQFQFAGYYAAIAQGYYRDAGLYVRLKEAGPGTDVVDEVVSGRAHYGVGSSDLLLDRQRGQPVVVLATPFQHSPLV
LLARADIDNVHDLVGRRLMLEYHSEELIAYLQHEGVALGLLHRQPHTLSADALIRGEVDAMSAYNTDETYTLQRSGVPYQ
TFTPRSAGIDFYGDNLFTSERELRDHGARVRAFREASLKGWRYAMLHPEEVVAWILTQYPATNNPALDRNKLLFEAKQMQ
PLIRADLVEMGYMYPGRWQHIAQTYMDLGLLTAMPDLDSFLYSQQEERAHQQQLMIYQGIAIGLLVTAFLLILLMIFLRL
NRRLREESKARHQLSQEIADNERHFRFITENSADVIWTMDIQSGRFTYLSPSVQHLRGFTVEEVLAQTGEELMTAESANR
IARQMKESLATWAAGDHINTKRVTLVDQPHKDGHLIHTEVVTTLHADKDGNPVSVLGVTRDISDRKASEEMMRQLAFYDP
LTHLPNRRLLQDRLQHSLQQADGKPLALLFIDLDHFKPVNDQHGHEAGDWLLATVAKRMLHCVREGDTVARIGGDEFMVL
LPEITGEAGAIAIAEAIHQSLNQTFAMTDALHFHISSCIGVALYPQHGTTQKQLMNHGDQAMYQAKEAGRNRIQLFTPQM
AGGITQEAVHQIQLGWKQSHDCGHPQIDDDHRQLFALANQLLNGVLTMEEDTDQFHQNFEALLALAASHFNNEEAILAKL
EYAELDTHRQEHQKLLRRANSLYQAARTGELTNLALLDFVLQDLVLGHMVKQDRRYFPLLKASMQEETLLSPDGPLTSPP
PGLVKH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=197, Percent_Identity=36.5482233502538, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI1788381, Length=247, Percent_Identity=31.9838056680162, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=35.195530726257, Blast_Score=104, Evalue=3e-23,
Organism=Escherichia coli, GI87081881, Length=200, Percent_Identity=34, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=32.258064516129, Blast_Score=98, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=185, Percent_Identity=32.972972972973, Blast_Score=97, Evalue=6e-21,
Organism=Escherichia coli, GI1787816, Length=224, Percent_Identity=29.4642857142857, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=30.188679245283, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=166, Percent_Identity=31.3253012048193, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=32.7586206896552, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=166, Percent_Identity=25.9036144578313, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=94, Percent_Identity=34.0425531914894, Blast_Score=67, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 91243; Mature: 91243

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF ; PS00550 HEMERYTHRINS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWHHQFQFAGYYAAIAQGYYRDAGLYVRLKEAGPGTDVVDEVVSGRAHYGVGSSDLLLD
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEE
RQRGQPVVVLATPFQHSPLVLLARADIDNVHDLVGRRLMLEYHSEELIAYLQHEGVALGL
CCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
LHRQPHTLSADALIRGEVDAMSAYNTDETYTLQRSGVPYQTFTPRSAGIDFYGDNLFTSE
EECCCCCCCCCCEEECCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
RELRDHGARVRAFREASLKGWRYAMLHPEEVVAWILTQYPATNNPALDRNKLLFEAKQMQ
HHHHHCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
PLIRADLVEMGYMYPGRWQHIAQTYMDLGLLTAMPDLDSFLYSQQEERAHQQQLMIYQGI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AIGLLVTAFLLILLMIFLRLNRRLREESKARHQLSQEIADNERHFRFITENSADVIWTMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
IQSGRFTYLSPSVQHLRGFTVEEVLAQTGEELMTAESANRIARQMKESLATWAAGDHINT
ECCCCEEEECCCHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KRVTLVDQPHKDGHLIHTEVVTTLHADKDGNPVSVLGVTRDISDRKASEEMMRQLAFYDP
CEEEEEECCCCCCCEEHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCH
LTHLPNRRLLQDRLQHSLQQADGKPLALLFIDLDHFKPVNDQHGHEAGDWLLATVAKRML
HHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
HCVREGDTVARIGGDEFMVLLPEITGEAGAIAIAEAIHQSLNQTFAMTDALHFHISSCIG
HHHHCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VALYPQHGTTQKQLMNHGDQAMYQAKEAGRNRIQLFTPQMAGGITQEAVHQIQLGWKQSH
EEEECCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHCCCCCC
DCGHPQIDDDHRQLFALANQLLNGVLTMEEDTDQFHQNFEALLALAASHFNNEEAILAKL
CCCCCCCCHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
EYAELDTHRQEHQKLLRRANSLYQAARTGELTNLALLDFVLQDLVLGHMVKQDRRYFPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KASMQEETLLSPDGPLTSPPPGLVKH
HHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKWHHQFQFAGYYAAIAQGYYRDAGLYVRLKEAGPGTDVVDEVVSGRAHYGVGSSDLLLD
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEEE
RQRGQPVVVLATPFQHSPLVLLARADIDNVHDLVGRRLMLEYHSEELIAYLQHEGVALGL
CCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
LHRQPHTLSADALIRGEVDAMSAYNTDETYTLQRSGVPYQTFTPRSAGIDFYGDNLFTSE
EECCCCCCCCCCEEECCHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
RELRDHGARVRAFREASLKGWRYAMLHPEEVVAWILTQYPATNNPALDRNKLLFEAKQMQ
HHHHHCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
PLIRADLVEMGYMYPGRWQHIAQTYMDLGLLTAMPDLDSFLYSQQEERAHQQQLMIYQGI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
AIGLLVTAFLLILLMIFLRLNRRLREESKARHQLSQEIADNERHFRFITENSADVIWTMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEE
IQSGRFTYLSPSVQHLRGFTVEEVLAQTGEELMTAESANRIARQMKESLATWAAGDHINT
ECCCCEEEECCCHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
KRVTLVDQPHKDGHLIHTEVVTTLHADKDGNPVSVLGVTRDISDRKASEEMMRQLAFYDP
CEEEEEECCCCCCCEEHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCH
LTHLPNRRLLQDRLQHSLQQADGKPLALLFIDLDHFKPVNDQHGHEAGDWLLATVAKRML
HHHCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
HCVREGDTVARIGGDEFMVLLPEITGEAGAIAIAEAIHQSLNQTFAMTDALHFHISSCIG
HHHHCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VALYPQHGTTQKQLMNHGDQAMYQAKEAGRNRIQLFTPQMAGGITQEAVHQIQLGWKQSH
EEEECCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHCCCHHHHHHHHHHCCCCCC
DCGHPQIDDDHRQLFALANQLLNGVLTMEEDTDQFHQNFEALLALAASHFNNEEAILAKL
CCCCCCCCHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHEEEE
EYAELDTHRQEHQKLLRRANSLYQAARTGELTNLALLDFVLQDLVLGHMVKQDRRYFPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KASMQEETLLSPDGPLTSPPPGLVKH
HHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]