Definition | Corynebacterium glutamicum R chromosome, complete genome. |
---|---|
Accession | NC_009342 |
Length | 3,314,179 |
Click here to switch to the map view.
The map label for this gene is yfcA [C]
Identifier: 145296033
GI number: 145296033
Start: 2152016
End: 2152813
Strand: Direct
Name: yfcA [C]
Synonym: cgR_1955
Alternate gene names: 145296033
Gene position: 2152016-2152813 (Clockwise)
Preceding gene: 145296019
Following gene: 145296040
Centisome position: 64.93
GC content: 51.25
Gene sequence:
>798_bases ATGTCAATCGAGTGGTTACAAATTGTTGAATTAGGAGCGATCTTTGGTGCAGGTTTCCTCGCAGGAAGCATCAATGTAAT TGTCGGAGCAGGAACACTAGTGTCGTTTCCTATTCTCGTGTTCCTGGGCCTTCCACCGTTGACTGCCACCATCGGCATCG TTCCTGGAAGTATTTCGGGTGTGGTTGCTTATAGACGTGAACTACACGCCCATGTAAAAACCATCAGATCTCTGCTGCCA GCATCAATCCTCGGAGGGATCACCGGCGCCTCGCTCTTGCTGCATTTCTCCGCAGATGTTTTTACAGCAGTAATTCCCTG GCTGATTGGATTCGGCACGCTGTTGGTTATCGCAGGTCCATCAATTAAGAAGCATGTTGGCGCTCATACTTCAGGTGGCA TCTCTGCCGGGTTTAGGCAATTGCCTTTCCCGAGCCGAACCACCTTCATCGTCTCAGTATGTGGTGCCCTGTTGCTGGGC ATGTATGGAGGGTACTTCAGCGCAGCTCAAGGCATTCTTCTCATCGCATTGCTTGGCATCACATCAACGCTGCAGATGCA GGAACTCAACGCCATCAAAAACCTCACAGTGGCGGCAGTTAATCTCATCGCAGCCAGTGTTTTTATAATCGTCTCCCCTG AGTTGATCTCCTGGCCGACCGTTGCCTTAATCGCGCTTGGCTCAGCTTTAGGTGCATACATCGGCGGACGGTACGCCCGC CGACTTCGCCCCAGTGTTTTTAGAGCATTTGTGGTCATCGTCGGAATCACCACGGTCATCGTTATGACGATCGGTTAA
Upstream 100 bases:
>100_bases CGTAAATTCGAAGCGAGCTTCTAATTCTAGCAAGCTTGGTGATGGAGGATCCTGCCAGAATTTGTCCTGTTGCTTATTGT GCAGGAATTCGGAGGCGGAC
Downstream 100 bases:
>100_bases TGCAGCAGACTAGTAACCCCTCTAGTTGTGAAGGGAACTACCTCGATGCTGGCGGTTCCAACAAGCGTGATCAACGCAAG AACAACATCTAGAGCAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: Permease; Conserved Inner Membrane Protein; Integral Membrane Transmembrane Protein; Conserved Domain Protein
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSIEWLQIVELGAIFGAGFLAGSINVIVGAGTLVSFPILVFLGLPPLTATIGIVPGSISGVVAYRRELHAHVKTIRSLLP ASILGGITGASLLLHFSADVFTAVIPWLIGFGTLLVIAGPSIKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLG MYGGYFSAAQGILLIALLGITSTLQMQELNAIKNLTVAAVNLIAASVFIIVSPELISWPTVALIALGSALGAYIGGRYAR RLRPSVFRAFVVIVGITTVIVMTIG
Sequences:
>Translated_265_residues MSIEWLQIVELGAIFGAGFLAGSINVIVGAGTLVSFPILVFLGLPPLTATIGIVPGSISGVVAYRRELHAHVKTIRSLLP ASILGGITGASLLLHFSADVFTAVIPWLIGFGTLLVIAGPSIKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLG MYGGYFSAAQGILLIALLGITSTLQMQELNAIKNLTVAAVNLIAASVFIIVSPELISWPTVALIALGSALGAYIGGRYAR RLRPSVFRAFVVIVGITTVIVMTIG >Mature_264_residues SIEWLQIVELGAIFGAGFLAGSINVIVGAGTLVSFPILVFLGLPPLTATIGIVPGSISGVVAYRRELHAHVKTIRSLLPA SILGGITGASLLLHFSADVFTAVIPWLIGFGTLLVIAGPSIKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLGM YGGYFSAAQGILLIALLGITSTLQMQELNAIKNLTVAAVNLIAASVFIIVSPELISWPTVALIALGSALGAYIGGRYARR LRPSVFRAFVVIVGITTVIVMTIG
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27458; Mature: 27327
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIEWLQIVELGAIFGAGFLAGSINVIVGAGTLVSFPILVFLGLPPLTATIGIVPGSISG CCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCHHHHHCCCCCCHHH VVAYRRELHAHVKTIRSLLPASILGGITGASLLLHFSADVFTAVIPWLIGFGTLLVIAGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC SIKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLGMYGGYFSAAQGILLIALLGI CHHHHCCCCCCCCHHHCHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH TSTLQMQELNAIKNLTVAAVNLIAASVFIIVSPELISWPTVALIALGSALGAYIGGRYAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHH RLRPSVFRAFVVIVGITTVIVMTIG HHHHHHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure SIEWLQIVELGAIFGAGFLAGSINVIVGAGTLVSFPILVFLGLPPLTATIGIVPGSISG CCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCHHHHHCCCCCCHHH VVAYRRELHAHVKTIRSLLPASILGGITGASLLLHFSADVFTAVIPWLIGFGTLLVIAGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC SIKKHVGAHTSGGISAGFRQLPFPSRTTFIVSVCGALLLGMYGGYFSAAQGILLIALLGI CHHHHCCCCCCCCHHHCHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH TSTLQMQELNAIKNLTVAAVNLIAASVFIIVSPELISWPTVALIALGSALGAYIGGRYAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHCCHHHHHHHHHHHHHHHHHHHHHH RLRPSVFRAFVVIVGITTVIVMTIG HHHHHHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA