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The map label for this gene is ypfJ [C]

Identifier: 145295758

GI number: 145295758

Start: 1873573

End: 1874397

Strand: Direct

Name: ypfJ [C]

Synonym: cgR_1684

Alternate gene names: 145295758

Gene position: 1873573-1874397 (Clockwise)

Preceding gene: 145295750

Following gene: 145295762

Centisome position: 56.53

GC content: 54.91

Gene sequence:

>825_bases
ATGGCTGTCGGTGGCGGCATCGGTGGCTTATTACTAGTCGGACTTTTCTTATTGTTGGGTGGTAACCCCGGTGAAATCGG
ACAGATTCTCGGAGGAGATCAAAACCAGACCGAATCTGGAGAAGACGTTGGAGCTGGCAATTTTGATCATTGCCAGACGG
GCGAAGACGCCAACAACTATGATGATTGCCGTCTGTATTACACCTCTTTTTCGGTGAATGAACTGTGGGCGGAGCTGCTT
CCAGCACAAGCTGGCATCCAATACACCGAGCCAACGTTGGCAATTTTTGAAGGTTCCACACAATCTGGGTGTGGTTTCGC
TTCCGCTTCCACAGGCCCGTTCTACTGCCCTTCAGACCAAGATGCTTATTTTGATTTGAGTTTCTTCGAGCAGATGCGCC
AGTTCGGCGCGGAAAATGCGCCGCTCGCCCAGATGTATATCGTGGCGCATGAGTACGGTCACCACATCCAGAACCTCGAG
GGCACTCTGGGGCTTTCCAATTACAACGATCCGGGTGCTGATTCCAATGCCGTCAAGATCGAGTTGCAGGCCGATTGCTA
CGCAGGCATTTGGGCAAACCATGCCGATAAGGGCGCCGATGCGCTGCTCGAGCCAATCACCGAATCCGAGCTCGATTCCG
CGCTGACAGCTGCAAGTGCCGTGGGTGATGACAACATCCAAGAGCGATCCGGCGGCGATGTCAACCCTGAAAGTTGGACT
CATGGCTCCTCGCAGCAGCGCAAGGACGCTTTCCTCGCCGGCTACACCACCGGCCAAATGAGCTCCTGCGACTTCCTCGG
CAGGGGCGTCTACACCGACGCTTAA

Upstream 100 bases:

>100_bases
TTTCCCTATGTAATGTGCCATGATTTCTTTCATGACGTTTCGTGGAGATATATCCCGCTCAGGCGGAAATGCTCGTAAAG
GCGGAGGCAGTGGCCGAGGC

Downstream 100 bases:

>100_bases
AACGCTGCTTTTCGACGTCTCCCCACACCGATTAATTCCGGCCTTAGGCAACTAGCTTAAGGCCGTTTCTTCATCTTTAG
GGCCAGTGGATTCAGTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MAVGGGIGGLLLVGLFLLLGGNPGEIGQILGGDQNQTESGEDVGAGNFDHCQTGEDANNYDDCRLYYTSFSVNELWAELL
PAQAGIQYTEPTLAIFEGSTQSGCGFASASTGPFYCPSDQDAYFDLSFFEQMRQFGAENAPLAQMYIVAHEYGHHIQNLE
GTLGLSNYNDPGADSNAVKIELQADCYAGIWANHADKGADALLEPITESELDSALTAASAVGDDNIQERSGGDVNPESWT
HGSSQQRKDAFLAGYTTGQMSSCDFLGRGVYTDA

Sequences:

>Translated_274_residues
MAVGGGIGGLLLVGLFLLLGGNPGEIGQILGGDQNQTESGEDVGAGNFDHCQTGEDANNYDDCRLYYTSFSVNELWAELL
PAQAGIQYTEPTLAIFEGSTQSGCGFASASTGPFYCPSDQDAYFDLSFFEQMRQFGAENAPLAQMYIVAHEYGHHIQNLE
GTLGLSNYNDPGADSNAVKIELQADCYAGIWANHADKGADALLEPITESELDSALTAASAVGDDNIQERSGGDVNPESWT
HGSSQQRKDAFLAGYTTGQMSSCDFLGRGVYTDA
>Mature_273_residues
AVGGGIGGLLLVGLFLLLGGNPGEIGQILGGDQNQTESGEDVGAGNFDHCQTGEDANNYDDCRLYYTSFSVNELWAELLP
AQAGIQYTEPTLAIFEGSTQSGCGFASASTGPFYCPSDQDAYFDLSFFEQMRQFGAENAPLAQMYIVAHEYGHHIQNLEG
TLGLSNYNDPGADSNAVKIELQADCYAGIWANHADKGADALLEPITESELDSALTAASAVGDDNIQERSGGDVNPESWTH
GSSQQRKDAFLAGYTTGQMSSCDFLGRGVYTDA

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=193, Percent_Identity=39.3782383419689, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 29062; Mature: 28931

Theoretical pI: Translated: 3.76; Mature: 3.76

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVGGGIGGLLLVGLFLLLGGNPGEIGQILGGDQNQTESGEDVGAGNFDHCQTGEDANNY
CCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDCRLYYTSFSVNELWAELLPAQAGIQYTEPTLAIFEGSTQSGCGFASASTGPFYCPSDQ
CCEEEEEEECCHHHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCCCCCCCCEECCCCC
DAYFDLSFFEQMRQFGAENAPLAQMYIVAHEYGHHIQNLEGTLGLSNYNDPGADSNAVKI
CCEEEHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEE
ELQADCYAGIWANHADKGADALLEPITESELDSALTAASAVGDDNIQERSGGDVNPESWT
EEECCEEECHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCC
HGSSQQRKDAFLAGYTTGQMSSCDFLGRGVYTDA
CCCCHHHHHHEEEECCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure 
AVGGGIGGLLLVGLFLLLGGNPGEIGQILGGDQNQTESGEDVGAGNFDHCQTGEDANNY
CCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DDCRLYYTSFSVNELWAELLPAQAGIQYTEPTLAIFEGSTQSGCGFASASTGPFYCPSDQ
CCEEEEEEECCHHHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCCCCCCCCCEECCCCC
DAYFDLSFFEQMRQFGAENAPLAQMYIVAHEYGHHIQNLEGTLGLSNYNDPGADSNAVKI
CCEEEHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHCCCCEECCCCCCCCCCCCCEEEE
ELQADCYAGIWANHADKGADALLEPITESELDSALTAASAVGDDNIQERSGGDVNPESWT
EEECCEEECHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCC
HGSSQQRKDAFLAGYTTGQMSSCDFLGRGVYTDA
CCCCHHHHHHEEEECCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]