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The map label for this gene is tnpR [H]

Identifier: 145294610

GI number: 145294610

Start: 620168

End: 621187

Strand: Direct

Name: tnpR [H]

Synonym: cgR_0561

Alternate gene names: 145294610

Gene position: 620168-621187 (Clockwise)

Preceding gene: 145294609

Following gene: 145294614

Centisome position: 18.71

GC content: 50.69

Gene sequence:

>1020_bases
ATGACACGCTACGGAACCCTCCTTGGACTACATGGCAAGCCCAAAGATCGGGTCATCATCATGCGCAAGGGCTCTAAGAC
CACTCGTGTGAAATTCCCTCATAAAGATAGACCCGGTTTCAACCTCGAAGAAGTGAAAGTCGATGCTTCGACTGTGCTCG
ATGATGGGGGAGAGCTGTGGGAAAAATATCAACGCACACCTAATTCAGCGACGTTTGTATCTTTTAGTGGCGAGCCGCAA
GGTCACCTTCATGTGCAGCGTGTCTATAAAAACGTGATCAAGGCCAGCGTCTATGAAGGCAATGGGCAATGGGGTCGTAT
TGATGATTTCCACCCGGAGCAGGTTCTTTTTGATGCAGGTGAAGCGTGGCCAAAATCTAAGACTGATCAGCTCCTCAACG
ACACTGATGTAGTGCCGGTACTAGAGGACACTCCTACACCGACTCCAAAAACCACCGACTTGGGTCAGCGTGTGGGCTAT
GTTCGTGTCTCTAGTACGGATCAAAATCTCGCTCGCCAGCGCGAAGCGATCGGTGCAGTCGACCGAGAGTTTGTTGATGA
GCTTTCTGCCAGATCGCGTGCACAACGACCAAGCCTAGAAGAATGTATTGCCTATTTACGTCACCATGATGAATTAGTCG
TGGCCTCGATTGATCGTCTGGCCAGGTCATTAGTGGATCTAAGATCCATTATTGATCAGATCACCGCAAAAGGCGCATCC
GTGAGCTTTATTAAAGAAGGGCTGGTGTTTTCTGCCACGGACCAGGATCCACGAGCAACTCTTATGCTCGGCATCTTAGG
GTCATTTGCGGAATTTGAACGCTCAATTATTCGTGAACGGCAAGCCGAGGGGATTGCGTTAGCGAAAAAGGCCGGTAAGT
TCACCGGCCGCAAAAAAGCGTTATCGCCTGAGCAAGTCGCACAAGCTCGTAGACGTGTAGAAGCTGGGGAAACAAAGACC
GCGATCGCTCAGGATCTCAGTGTCAGTCGAGCAACGCTGTACCGAGCATTGGCCGAGTAG

Upstream 100 bases:

>100_bases
CTTCTGATCCCACTATTTCTACTGTCTCACTAAGTCCTAATCTACTTTTTGATACACTTGTCTCAAGAAGTTATTAATCC
TATTGAGACAGCGGGACGAC

Downstream 100 bases:

>100_bases
AGGCAGAATTGTCAGTAACCTAGAAAGCGCTAGGTGGAGGAACTACTACGATCAGTCGTTACTGAGTTGCTGGTTTCGAC
GTTCATGTCTGAATCTAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTRYGTLLGLHGKPKDRVIIMRKGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELWEKYQRTPNSATFVSFSGEPQ
GHLHVQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGY
VRVSSTDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIAYLRHHDELVVASIDRLARSLVDLRSIIDQITAKGAS
VSFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKALSPEQVAQARRRVEAGETKT
AIAQDLSVSRATLYRALAE

Sequences:

>Translated_339_residues
MTRYGTLLGLHGKPKDRVIIMRKGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELWEKYQRTPNSATFVSFSGEPQ
GHLHVQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGY
VRVSSTDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIAYLRHHDELVVASIDRLARSLVDLRSIIDQITAKGAS
VSFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKALSPEQVAQARRRVEAGETKT
AIAQDLSVSRATLYRALAE
>Mature_338_residues
TRYGTLLGLHGKPKDRVIIMRKGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELWEKYQRTPNSATFVSFSGEPQG
HLHVQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAGEAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGYV
RVSSTDQNLARQREAIGAVDREFVDELSARSRAQRPSLEECIAYLRHHDELVVASIDRLARSLVDLRSIIDQITAKGASV
SFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKALSPEQVAQARRRVEAGETKTA
IAQDLSVSRATLYRALAE

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=180, Percent_Identity=34.4444444444444, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787827, Length=193, Percent_Identity=31.0880829015544, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787638, Length=188, Percent_Identity=31.3829787234043, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 37728; Mature: 37597

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00397 RECOMBINASES_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYGTLLGLHGKPKDRVIIMRKGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELW
CCCCCCEEECCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHEEECHHHHHCCCHHHH
EKYQRTPNSATFVSFSGEPQGHLHVQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAG
HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHCCC
EAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGYVRVSSTDQNLARQREAIGAV
CCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHH
DREFVDELSARSRAQRPSLEECIAYLRHHDELVVASIDRLARSLVDLRSIIDQITAKGAS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKA
HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
LSPEQVAQARRRVEAGETKTAIAQDLSVSRATLYRALAE
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRYGTLLGLHGKPKDRVIIMRKGSKTTRVKFPHKDRPGFNLEEVKVDASTVLDDGGELW
CCCCCEEECCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHEEECHHHHHCCCHHHH
EKYQRTPNSATFVSFSGEPQGHLHVQRVYKNVIKASVYEGNGQWGRIDDFHPEQVLFDAG
HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHCCC
EAWPKSKTDQLLNDTDVVPVLEDTPTPTPKTTDLGQRVGYVRVSSTDQNLARQREAIGAV
CCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHCCEEEECCCHHHHHHHHHHHHHH
DREFVDELSARSRAQRPSLEECIAYLRHHDELVVASIDRLARSLVDLRSIIDQITAKGAS
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VSFIKEGLVFSATDQDPRATLMLGILGSFAEFERSIIRERQAEGIALAKKAGKFTGRKKA
HHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
LSPEQVAQARRRVEAGETKTAIAQDLSVSRATLYRALAE
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2992807; 6312271; 3029727 [H]