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The map label for this gene is deoC [H]

Identifier: 145294502

GI number: 145294502

Start: 510742

End: 511416

Strand: Direct

Name: deoC [H]

Synonym: cgR_0457

Alternate gene names: 145294502

Gene position: 510742-511416 (Clockwise)

Preceding gene: 145294500

Following gene: 145294506

Centisome position: 15.41

GC content: 54.52

Gene sequence:

>675_bases
ATGGATATGACGATTTCCCGCGCCACCATGGCCCAAATCCTTGACTACACCCTCCTCGGGCCAGAAGTAACCAACTCCGA
ACTAGCCGCATTTATAGATTCCGCAATTGAGCTGGGAGTCGGCACGATCTGTGTCCCCAACAGCATGGTCAACCTAACTG
CAAAAGCCCAAGAAGCTGGAATTCGAGTGGCCACCGTCGCAGGATTCCCGCACGGCAAAACCCCCGCGTTGGTGAAAGCC
GCCGAAGCTCGCCTTGCCGTACAGTCCGGAGCTTCCGAAGTAGATGTTGTTTTGGATATTGCGGTAGTGAAAGAGGGAGA
TGCCAATAGGTTGCTGCAGGAAATTGTGGCAATCAGGGAGGCTGTTCCATCTCCTGTGGTGCTGAAATTCATCCTCGAGA
CGGCTGTCGTGAGTGATGATGCAATTGTGACTGCAGTGAATGCGTTGATTGCTGCAGGTGCTGACTTCGCTAAAACTTCC
ACGGGATTTCACCCGGCGGGAGGGGCAACTGTTGAGGCTGTTCGGGTGATGGCTTCGGCTTCTCGGGGAAGGGTTGGAAT
TAAGGCTGCGGGTGGGGTGAAAACTTGGGAAGATGCGGTGGCGTTTGTTGAAGCAGGGGCTACTCGCATTGGAACTTCTA
ATGCGGGAGCCATTTTAGAGGGTGCGCCGGAGTAG

Upstream 100 bases:

>100_bases
GCGCAGTGCTCGGACGATTACGAACTTCAGGAGAACTCGGGGTCATTCGTCGCATTCTACCCTGGAAATTTTCCCACACT
AAGTCAGGTCTAAGTAGGGT

Downstream 100 bases:

>100_bases
TTTGTGCGGATTCACCATTTTTGAGGGGGAGGTGCTGGAAAATGGTGAATTGGCACATTTTTTTGGGCTGAAAACGTTAG
GATTCACCATTTTATTGGGG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDMTISRATMAQILDYTLLGPEVTNSELAAFIDSAIELGVGTICVPNSMVNLTAKAQEAGIRVATVAGFPHGKTPALVKA
AEARLAVQSGASEVDVVLDIAVVKEGDANRLLQEIVAIREAVPSPVVLKFILETAVVSDDAIVTAVNALIAAGADFAKTS
TGFHPAGGATVEAVRVMASASRGRVGIKAAGGVKTWEDAVAFVEAGATRIGTSNAGAILEGAPE

Sequences:

>Translated_224_residues
MDMTISRATMAQILDYTLLGPEVTNSELAAFIDSAIELGVGTICVPNSMVNLTAKAQEAGIRVATVAGFPHGKTPALVKA
AEARLAVQSGASEVDVVLDIAVVKEGDANRLLQEIVAIREAVPSPVVLKFILETAVVSDDAIVTAVNALIAAGADFAKTS
TGFHPAGGATVEAVRVMASASRGRVGIKAAGGVKTWEDAVAFVEAGATRIGTSNAGAILEGAPE
>Mature_224_residues
MDMTISRATMAQILDYTLLGPEVTNSELAAFIDSAIELGVGTICVPNSMVNLTAKAQEAGIRVATVAGFPHGKTPALVKA
AEARLAVQSGASEVDVVLDIAVVKEGDANRLLQEIVAIREAVPSPVVLKFILETAVVSDDAIVTAVNALIAAGADFAKTS
TGFHPAGGATVEAVRVMASASRGRVGIKAAGGVKTWEDAVAFVEAGATRIGTSNAGAILEGAPE

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=172, Percent_Identity=34.3023255813954, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1790841, Length=216, Percent_Identity=35.1851851851852, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=211, Percent_Identity=31.7535545023697, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI19922098, Length=188, Percent_Identity=31.3829787234043, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 22736; Mature: 22736

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMTISRATMAQILDYTLLGPEVTNSELAAFIDSAIELGVGTICVPNSMVNLTAKAQEAG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEEHHHHCC
IRVATVAGFPHGKTPALVKAAEARLAVQSGASEVDVVLDIAVVKEGDANRLLQEIVAIRE
EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH
AVPSPVVLKFILETAVVSDDAIVTAVNALIAAGADFAKTSTGFHPAGGATVEAVRVMASA
HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
SRGRVGIKAAGGVKTWEDAVAFVEAGATRIGTSNAGAILEGAPE
CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCC
>Mature Secondary Structure
MDMTISRATMAQILDYTLLGPEVTNSELAAFIDSAIELGVGTICVPNSMVNLTAKAQEAG
CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEEEEHHHHCC
IRVATVAGFPHGKTPALVKAAEARLAVQSGASEVDVVLDIAVVKEGDANRLLQEIVAIRE
EEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHH
AVPSPVVLKFILETAVVSDDAIVTAVNALIAAGADFAKTSTGFHPAGGATVEAVRVMASA
HCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHHHH
SRGRVGIKAAGGVKTWEDAVAFVEAGATRIGTSNAGAILEGAPE
CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]