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The map label for this gene is cspA [H]

Identifier: 145294439

GI number: 145294439

Start: 427160

End: 427363

Strand: Direct

Name: cspA [H]

Synonym: cgR_0394

Alternate gene names: 145294439

Gene position: 427160-427363 (Clockwise)

Preceding gene: 145294437

Following gene: 145294440

Centisome position: 12.89

GC content: 57.84

Gene sequence:

>204_bases
ATGGCACAGGGCACTGTTAAGTGGTTCAACCCAGAGAAGGGCTTCGGCTTCATCGCTCCTTCCGACGGATCCGCTGACGT
TTTCGTCCACTACTCCGAGATCCAGGGCAACGGCTTCCGTACCCTCGAGGAGAACCAGCTCGTCGAGTTCGAAATCGGCG
AGGGCGCTAAGGGCCTTCAGGCTCAGGCTGTTCGTGCAATCTAA

Upstream 100 bases:

>100_bases
TCGGCGTTCGTTCAAGAAACGGCCAGATGTTGCCGTTCGAGCTCATGCAAGAGTGGAACATCGAACCCGGTAGTAATTCC
AATCAGTAAAGGTAAGACAA

Downstream 100 bases:

>100_bases
TTGCATCTGAGTTCGAAACCGGTAACTTTTGTAAGTTGCCGGTTTTTTTAATACCTAAAACAGGTGGGGCTAGAAGGGCC
GTTTTATTCGTCCGAGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MAQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAKGLQAQAVRAI

Sequences:

>Translated_67_residues
MAQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAKGLQAQAVRAI
>Mature_66_residues
AQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAKGLQAQAVRAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=67.6923076923077, Blast_Score=89, Evalue=7e-20,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=66.1538461538461, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=67.1875, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=60.9375, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=57.8125, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=62.2950819672131, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=77, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17533635, Length=66, Percent_Identity=46.969696969697, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=52.4590163934426, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7289; Mature: 7158

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAKGLQ
CCCCCEEEECCCCCCEEEECCCCCCEEEEEEEEECCCCCEEECCCCEEEEEECCCCCCCC
AQAVRAI
CEEEECC
>Mature Secondary Structure 
AQGTVKWFNPEKGFGFIAPSDGSADVFVHYSEIQGNGFRTLEENQLVEFEIGEGAKGLQ
CCCCEEEECCCCCCEEEECCCCCCEEEEEEEEECCCCCEEECCCCEEEEEECCCCCCCC
AQAVRAI
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]