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The map label for this gene is truncated-tnp

Identifier: 14141851

GI number: 14141851

Start: 19113

End: 19397

Strand: Reverse

Name: truncated-tnp

Synonym: SAVP028

Alternate gene names: NA

Gene position: 19397-19113 (Counterclockwise)

Preceding gene: 14141852

Following gene: 14141850

Centisome position: 77.26

GC content: 36.14

Gene sequence:

>285_bases
TTGATTCATGATTATATCGATCAACCAAAATATTCAAAAGCTTGCGCATCATTGGATGATGGATTCGAAGACGCCTTTCA
ATATACCGTACAAGGAAATTCCCACAATCGACTAAAGAGTACCAATCTAATTGAACGACTGAATCAAGAAGTACGCAGAA
GAGAAAAGATTATTCGCATCTTCCCCAATCAAACATCAGCCAATCGCTTAATTGGAGCCGTTCTTATGGACCTACATGAT
GAATGGATTTATTCTTCAAGAAAATACATCAATTTTGATAAGTAG

Upstream 100 bases:

>100_bases
CAACAGAACCCCTAAAAAAAATTCAAAATCTTTCAGAGAAGCTGTTAAAGGAATTTTTAAGTTCACAGATATTAACTTAG
CGCGTGAGGCTAAAAATCGA

Downstream 100 bases:

>100_bases
AAATGGTAAAAACATTGTATAGCATTTTACACAGGAGTCTGGACTTGACTGAGTTTATGGAAGAAGTTTTAATTGATGAT
AATATGGTTTTTGATATTGA

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHD
EWIYSSRKYINFDK

Sequences:

>Translated_94_residues
MIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHD
EWIYSSRKYINFDK
>Mature_94_residues
MIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHD
EWIYSSRKYINFDK

Specific function: Required for the transposition of the insertion element [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase mutator family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018289
- InterPro:   IPR001207 [H]

Pfam domain/function: PF10551 MULE; PF00872 Transposase_mut [H]

EC number: NA

Molecular weight: Translated: 11152; Mature: 11152

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRI
CCCCCCCCCCHHHHHHHHCCCHHHHHEEHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
FPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRI
CCCCCCCCCCHHHHHHHHCCCHHHHHEEHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
FPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]