Click here to switch to the map view.

The map label for this gene is ywhC [H]

Identifier: 138896982

GI number: 138896982

Start: 3462200

End: 3462913

Strand: Reverse

Name: ywhC [H]

Synonym: GTNG_3353

Alternate gene names: 138896982

Gene position: 3462913-3462200 (Counterclockwise)

Preceding gene: 138896985

Following gene: 138896981

Centisome position: 97.54

GC content: 48.6

Gene sequence:

>714_bases
ATGTATACTAAGGATAGTGAATACAGGGGAAAAGGAGTTAATCAAGTGGAACGTATTTTGCCGTATTCGTTAAGTGAAAT
TCCGTACGTTTTGTTAACGCTGGCGCTAGCGTTTTCCGTGCATGAGTTTGCCCATGCGTACGTCGCCTACAAGTTCGGCG
ATCCGACCGCCAAAAATCAAGGTCGGTTGACATTATCGCCGTTTGCTCATTTGGATTTATTTGGCACGCTGCTTATTTTC
TTAGCCGGTTTCGGTTGGGCGCGGCCGGTGCCGGTCAACCGTTTCCATTTTAAAAACCCGCGTCTAGCTGGCATTCTCGT
GTCGGTCGCCGGGCCGCTAAGCAACCTTTTGCTTGCTGGACTTGGGTTTATCGTTTGGTATGCGATGATCGATTTCGGCA
TTATGAGGGCGCTGCCTAATTGGTTTGCGGCCGGGTTTGATATGTTTTTCCAAATTTTTATCGGCTTGAACACCGTCTTG
TTTGTGTTTAATTTATTGCCGTTTCCGCCGCTTGATGGGTATCGTATCATTGAAGACATCGCTCCGGATGGGCTGCGAGC
GAAAATGACGCAATGGGAAAACTACGGGGCGCTCATTTTTCTCATTCTCGTGCTGACACCGCTTGATCGGTACACGATTG
AGCCGGTGTTTCAAGTGGCGTTGCCGTTCGTGCTTGAACATTTGCAGGCGTTTGCTGCCAACTTGTTTATGTAG

Upstream 100 bases:

>100_bases
GTTACATACGGCATCGTGATTCCCCCATTTCATTGTCGAGTGCTGTCGCGCTTATTATACCATGGAACAGTAAAGTTCAA
TCCACTTTTAGCGGTAAATC

Downstream 100 bases:

>100_bases
GAAGGAGGAAGAAGCGAATGGAGCAAAAAAAGAAGAAAAATATCGGCTTTAACATTATTAAAGACGATCCGACCGATGGA
CATCGCGGTTTTGGTGCCGG

Product: membrane metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MYTKDSEYRGKGVNQVERILPYSLSEIPYVLLTLALAFSVHEFAHAYVAYKFGDPTAKNQGRLTLSPFAHLDLFGTLLIF
LAGFGWARPVPVNRFHFKNPRLAGILVSVAGPLSNLLLAGLGFIVWYAMIDFGIMRALPNWFAAGFDMFFQIFIGLNTVL
FVFNLLPFPPLDGYRIIEDIAPDGLRAKMTQWENYGALIFLILVLTPLDRYTIEPVFQVALPFVLEHLQAFAANLFM

Sequences:

>Translated_237_residues
MYTKDSEYRGKGVNQVERILPYSLSEIPYVLLTLALAFSVHEFAHAYVAYKFGDPTAKNQGRLTLSPFAHLDLFGTLLIF
LAGFGWARPVPVNRFHFKNPRLAGILVSVAGPLSNLLLAGLGFIVWYAMIDFGIMRALPNWFAAGFDMFFQIFIGLNTVL
FVFNLLPFPPLDGYRIIEDIAPDGLRAKMTQWENYGALIFLILVLTPLDRYTIEPVFQVALPFVLEHLQAFAANLFM
>Mature_237_residues
MYTKDSEYRGKGVNQVERILPYSLSEIPYVLLTLALAFSVHEFAHAYVAYKFGDPTAKNQGRLTLSPFAHLDLFGTLLIF
LAGFGWARPVPVNRFHFKNPRLAGILVSVAGPLSNLLLAGLGFIVWYAMIDFGIMRALPNWFAAGFDMFFQIFIGLNTVL
FVFNLLPFPPLDGYRIIEDIAPDGLRAKMTQWENYGALIFLILVLTPLDRYTIEPVFQVALPFVLEHLQAFAANLFM

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 26745; Mature: 26745

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTKDSEYRGKGVNQVERILPYSLSEIPYVLLTLALAFSVHEFAHAYVAYKFGDPTAKNQ
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
GRLTLSPFAHLDLFGTLLIFLAGFGWARPVPVNRFHFKNPRLAGILVSVAGPLSNLLLAG
CCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH
LGFIVWYAMIDFGIMRALPNWFAAGFDMFFQIFIGLNTVLFVFNLLPFPPLDGYRIIEDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
APDGLRAKMTQWENYGALIFLILVLTPLDRYTIEPVFQVALPFVLEHLQAFAANLFM
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYTKDSEYRGKGVNQVERILPYSLSEIPYVLLTLALAFSVHEFAHAYVAYKFGDPTAKNQ
CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
GRLTLSPFAHLDLFGTLLIFLAGFGWARPVPVNRFHFKNPRLAGILVSVAGPLSNLLLAG
CCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHH
LGFIVWYAMIDFGIMRALPNWFAAGFDMFFQIFIGLNTVLFVFNLLPFPPLDGYRIIEDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
APDGLRAKMTQWENYGALIFLILVLTPLDRYTIEPVFQVALPFVLEHLQAFAANLFM
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]