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The map label for this gene is potC [H]

Identifier: 138896859

GI number: 138896859

Start: 3333700

End: 3334500

Strand: Reverse

Name: potC [H]

Synonym: GTNG_3224

Alternate gene names: 138896859

Gene position: 3334500-3333700 (Counterclockwise)

Preceding gene: 138896860

Following gene: 138896858

Centisome position: 93.92

GC content: 36.2

Gene sequence:

>801_bases
ATGAAGAAAAGACTATATAATTTTATATTTCATTCGTTTTGCTTTGTCGTATATGTTTTTTTGTTAGCACCAATTATTGT
AGTTTTACTATCTTCATTGACAACGACTGAATATATTGTTTTTCCGCCAAAGGGGATTACATTGAAATGGTATATTGAAT
TAGTCAACCACCCTGAGTTTACACAGTCTTTTGTGTTAAGTGTCATTGTCGCTCTAGGCACGTCACTTTTTTCTACCTTT
ATTGGAACACTTGCTTCTATTGCCATTGTTAGATATCAGTTTAAAGGAAAAGCAACTATTGTGCAGTTAGTTGGCTCCCC
TCTTTTAATTCCGTCCGTCGTATTTGGCGTAGCGTTGCTACAGTTTTATTCTTGGATAGGTTTAGCTACAAGCCCTATGG
CTTTAATTATTGGCCATATTATTTTGACGGTACCATTTGTTGTACGATTAGTCGTTGCTAGTTTAGTCGGTTTTGATCGA
TCTATAGAACAGGCCGCGAGGAGTTTAGGGGCAGGGGCTTTTAAAGTATTCTTCCAGATTACTCTTCCGATAATCAAATC
CGGTGTGATTGCTGGAGCCATCTTTTCATTCATTACCTCATTTGATGATCTAACCGTAGCATTGTTTATTGTAAGCACCG
ATGTTGTCACTCTTCCAGTACGAATCTTTACCTATATGCAATACCAGTACGATCCAATTATTACATCAGTATCAAGCATC
ATAATTTTATTTACCGTTGTACTAATGGTGATCATCGAAAAGGTGTTAGGTGTTGGAAAAGTTTTTATGTCGAAAAATTA
A

Upstream 100 bases:

>100_bases
ATGGGTCTGCCATTGGGTTTGTATTAATTTTTATGGCAACTGTTACGATTATCGTATATAGCAGAATTCTTGCCCGTTCC
GAAAAAGGAGTGGCGATTCA

Downstream 100 bases:

>100_bases
TAAGGAGTTGTTTTCATGCATATTAAAAATCATCCTATATTGGGCAGCTGTCTTCAGGAGCCTGTGACATTTTATTTTAA
TGATCAGCCTTATACGGCTT

Product: ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKKRLYNFIFHSFCFVVYVFLLAPIIVVLLSSLTTTEYIVFPPKGITLKWYIELVNHPEFTQSFVLSVIVALGTSLFSTF
IGTLASIAIVRYQFKGKATIVQLVGSPLLIPSVVFGVALLQFYSWIGLATSPMALIIGHIILTVPFVVRLVVASLVGFDR
SIEQAARSLGAGAFKVFFQITLPIIKSGVIAGAIFSFITSFDDLTVALFIVSTDVVTLPVRIFTYMQYQYDPIITSVSSI
IILFTVVLMVIIEKVLGVGKVFMSKN

Sequences:

>Translated_266_residues
MKKRLYNFIFHSFCFVVYVFLLAPIIVVLLSSLTTTEYIVFPPKGITLKWYIELVNHPEFTQSFVLSVIVALGTSLFSTF
IGTLASIAIVRYQFKGKATIVQLVGSPLLIPSVVFGVALLQFYSWIGLATSPMALIIGHIILTVPFVVRLVVASLVGFDR
SIEQAARSLGAGAFKVFFQITLPIIKSGVIAGAIFSFITSFDDLTVALFIVSTDVVTLPVRIFTYMQYQYDPIITSVSSI
IILFTVVLMVIIEKVLGVGKVFMSKN
>Mature_266_residues
MKKRLYNFIFHSFCFVVYVFLLAPIIVVLLSSLTTTEYIVFPPKGITLKWYIELVNHPEFTQSFVLSVIVALGTSLFSTF
IGTLASIAIVRYQFKGKATIVQLVGSPLLIPSVVFGVALLQFYSWIGLATSPMALIIGHIILTVPFVVRLVVASLVGFDR
SIEQAARSLGAGAFKVFFQITLPIIKSGVIAGAIFSFITSFDDLTVALFIVSTDVVTLPVRIFTYMQYQYDPIITSVSSI
IILFTVVLMVIIEKVLGVGKVFMSKN

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=217, Percent_Identity=30.8755760368664, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787081, Length=232, Percent_Identity=29.7413793103448, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787714, Length=234, Percent_Identity=29.0598290598291, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786980, Length=190, Percent_Identity=32.6315789473684, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788764, Length=216, Percent_Identity=25.462962962963, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787571, Length=181, Percent_Identity=28.7292817679558, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29328; Mature: 29328

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRLYNFIFHSFCFVVYVFLLAPIIVVLLSSLTTTEYIVFPPKGITLKWYIELVNHPEF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCH
TQSFVLSVIVALGTSLFSTFIGTLASIAIVRYQFKGKATIVQLVGSPLLIPSVVFGVALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
QFYSWIGLATSPMALIIGHIILTVPFVVRLVVASLVGFDRSIEQAARSLGAGAFKVFFQI
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
TLPIIKSGVIAGAIFSFITSFDDLTVALFIVSTDVVTLPVRIFTYMQYQYDPIITSVSSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IILFTVVLMVIIEKVLGVGKVFMSKN
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]