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The map label for this gene is smpB [H]

Identifier: 138896634

GI number: 138896634

Start: 3093301

End: 3093786

Strand: Reverse

Name: smpB [H]

Synonym: GTNG_2997

Alternate gene names: 138896634

Gene position: 3093786-3093301 (Counterclockwise)

Preceding gene: 138896635

Following gene: 138896632

Centisome position: 87.14

GC content: 47.33

Gene sequence:

>486_bases
ATGAGGAGGAGGACGTTCATGCCAAAAGGGGAAGGAAAAGTCATCGCGCAAAACAAAAAAGCGCGCCATGATTATTTTAT
TGAAGAAACGTATGAAGCGGGTCTTGTTTTGCAAGGGACGGAAATTAAATCGATCCGCAACGGACGGGTGAACTTAAAAG
ATTCGTTCGCCAAAGTGGAAAAAGGGGAAGTATTTCTCCATAATATGCATATTAGTCCGTATGAACAAGGCAACCGCTAC
AACCATGATCCGCTGCGGACGCGCAAGCTCCTCCTGCACCGCCGCGAAATCAACAAACTGATCGGCTACACGAAAGAGCA
AGGGTATACGCTCGTACCGCTGAAATTGTATATCAAAAACGGCTTTGCCAAAGTGGAACTTGGTGTCGCCAAAGGGAAGA
AAAAATACGACAAGCGCGAAGACATGAAGCGGAAAGAAGCGCAGCGAGAAATCGAGCGGGCGTTCCGTGAGCGGCAAAAA
ATTTAG

Upstream 100 bases:

>100_bases
ATACCAAAGCGAAAAAGAAGAAAAAGAAAAAACGGTGAGGAAAAGCCGAGCAGGCGGCTTTTCCTTCTTTTTCGTTTTTG
GTACAATAAAAGCGCTACGA

Downstream 100 bases:

>100_bases
CGCATATTTCCATTGAAAATGCGCTCAGCCATGATATAATAAGAGTACGAAAGCCAGTGATTCATGCTTAAGCTCCGATC
TTTCTTCGCAACCGCGGGGA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MRRRTFMPKGEGKVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHISPYEQGNRY
NHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIKNGFAKVELGVAKGKKKYDKREDMKRKEAQREIERAFRERQK
I

Sequences:

>Translated_161_residues
MRRRTFMPKGEGKVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHISPYEQGNRY
NHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIKNGFAKVELGVAKGKKKYDKREDMKRKEAQREIERAFRERQK
I
>Mature_161_residues
MRRRTFMPKGEGKVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHISPYEQGNRY
NHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIKNGFAKVELGVAKGKKKYDKREDMKRKEAQREIERAFRERQK
I

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=136, Percent_Identity=52.2058823529412, Blast_Score=148, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 19121; Mature: 19121

Theoretical pI: Translated: 10.74; Mature: 10.74

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRTFMPKGEGKVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVE
CCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCHHHHHCCCCCCCHHHHHHHC
KGEVFLHNMHISPYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIKN
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEC
GFAKVELGVAKGKKKYDKREDMKRKEAQREIERAFRERQKI
CCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRRTFMPKGEGKVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVE
CCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCEEEECCHHHHHCCCCCCCHHHHHHHC
KGEVFLHNMHISPYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIKN
CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEC
GFAKVELGVAKGKKKYDKREDMKRKEAQREIERAFRERQKI
CCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA