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The map label for this gene is ysmB [H]

Identifier: 138896234

GI number: 138896234

Start: 2706212

End: 2706655

Strand: Reverse

Name: ysmB [H]

Synonym: GTNG_2597

Alternate gene names: 138896234

Gene position: 2706655-2706212 (Counterclockwise)

Preceding gene: 138896235

Following gene: 138896233

Centisome position: 76.24

GC content: 47.3

Gene sequence:

>444_bases
ATGCCGTCTGCGATGAACGAAAAAACGGTTGCCGAATTAGAAAAATTGCTTCGCTATATCGCCGCTAACTTAAAGCAGCG
CGGCCGTGAAATTTTAACCAATTATCCGATTACCCCCCCGCAGTTTGTCGCTTTGCAATGGTTACTTGAAGAAGGGGACT
TGACGGTCGGCGAATTATCGAACAAAATGTATTTGGCGTGCAGCACGACGACCGATTTGATTGACCGTATGGAACGGAAC
GGCCTTGTCAGCAGAGTCCGGGATGAACACGACCGCCGTGTCGTCCGCATCCATCTGTTGGAAAAAGGCGAGCGCATCAT
CGAGGAAGTCATTGAAAAACGCCAACGTGATTTGGCAAGAGTATTGGAGAACTTTTCGGACGAGGAAATCGTCTTTTTGG
AACGCTGTTTACGCAAGTTACATCAAGAAATGAACAAAGAATGA

Upstream 100 bases:

>100_bases
GATTATGTCCCGGGGTGTTGTAAAATGAAAAATAGAATATCGTATTGGCACAAGCCGGTGATTCATGGCTAGGCCGCGAA
AATGATCAAGGGGAGATTGT

Downstream 100 bases:

>100_bases
GGCGATCACTTGGAAAGAGCAATTGGTGTTATTGATTCAGGAGTTGGCGGCTTAACAGTTGCCAAGGAAATTATTCGTCA
GTTACCGAAAGAGCGAATCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 146

Protein sequence:

>147_residues
MPSAMNEKTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLIDRMERN
GLVSRVRDEHDRRVVRIHLLEKGERIIEEVIEKRQRDLARVLENFSDEEIVFLERCLRKLHQEMNKE

Sequences:

>Translated_147_residues
MPSAMNEKTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLIDRMERN
GLVSRVRDEHDRRVVRIHLLEKGERIIEEVIEKRQRDLARVLENFSDEEIVFLERCLRKLHQEMNKE
>Mature_146_residues
PSAMNEKTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLIDRMERNG
LVSRVRDEHDRRVVRIHLLEKGERIIEEVIEKRQRDLARVLENFSDEEIVFLERCLRKLHQEMNKE

Specific function: Negative Regulator Of The Multidrug Operon Emrab. [C]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17348; Mature: 17217

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSAMNEKTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHC
NKMYLACSTTTDLIDRMERNGLVSRVRDEHDRRVVRIHLLEKGERIIEEVIEKRQRDLAR
CCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLENFSDEEIVFLERCLRKLHQEMNKE
HHHCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PSAMNEKTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHC
NKMYLACSTTTDLIDRMERNGLVSRVRDEHDRRVVRIHLLEKGERIIEEVIEKRQRDLAR
CCEEEEECCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLENFSDEEIVFLERCLRKLHQEMNKE
HHHCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]