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The map label for this gene is radC [C]

Identifier: 138896185

GI number: 138896185

Start: 2650417

End: 2651097

Strand: Reverse

Name: radC [C]

Synonym: GTNG_2548

Alternate gene names: 138896185

Gene position: 2651097-2650417 (Counterclockwise)

Preceding gene: 138896186

Following gene: 138896184

Centisome position: 74.67

GC content: 50.81

Gene sequence:

>681_bases
ATGACGTGGATGATTCGTGACGTGCCGAAAGACAGCCGGCCGCGTGAACGGTTGCTGGCATCCGGGCCGGAAAGCTTATC
CGATCATGAGTTATTGGCGATTTTGCTGCGCACCGGGACGAAAGACGAGTCAGTCGTGCAGCTCGCCCAGCGTGTTCTCC
AGCATTTTGAAGGGCTGAGGCTGCTGAAAGACGCGACGGTTGAAGAAATGACCAGCATTAAAGGAATTGGCCCGACGAAA
GCGGTGCAAATTTTAGCCGCGCTTGAGCTTGGCCGGCGCATTCACCAGTCCGGCTACAATGACCGCTATGTCATCCGTTG
TCCGGAGGACGGAGCCAAATACGTGATGGAAGATATGCGCTTTTTATCGCAAGAACATTTTGTTGCCATTTATTTGAATA
CGAAAAACCAAGTCATCCACCGCAAAACGGTATTCATCGGAAGTTTAAACGCCTCAATTGTCCATCCACGCGAAGTGTTT
AAAGAGGCGATCAAACGATCCGCCGCCTCGGTCATTTGCGTGCATAATCACCCCTCTGGCGATCCGACCCCAAGCCGTGA
AGACATCGATGTCACAAAACGGCTCGCTGAATGCGGACGCATTATCGGCATCGAACTCTTGGATCATCTCATTATCGGCG
ACCAAAAATTCATCAGTTTGAAAGAAAAAGGATACGTCTAA

Upstream 100 bases:

>100_bases
GCGGCTGGCCGCTCTTTGGGCAGGCCCAAAAAGCGTCCCTAAGCGGTGTTTGCTCCTCAATTGAAGGGGAGACGATGATC
ACAAAAAAAGGGGAGATACG

Downstream 100 bases:

>100_bases
CGGTTCTCATTTTTTGTCGAATCAGGTATAATATCAATTATGAGTTTTTCTGAATCTGCTTGGGCGGTGCTGTACAACTT
ATAAATGACTGACATCCGAC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MTWMIRDVPKDSRPRERLLASGPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLRLLKDATVEEMTSIKGIGPTK
AVQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQVIHRKTVFIGSLNASIVHPREVF
KEAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAECGRIIGIELLDHLIIGDQKFISLKEKGYV

Sequences:

>Translated_226_residues
MTWMIRDVPKDSRPRERLLASGPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLRLLKDATVEEMTSIKGIGPTK
AVQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQVIHRKTVFIGSLNASIVHPREVF
KEAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAECGRIIGIELLDHLIIGDQKFISLKEKGYV
>Mature_225_residues
TWMIRDVPKDSRPRERLLASGPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLRLLKDATVEEMTSIKGIGPTKA
VQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQVIHRKTVFIGSLNASIVHPREVFK
EAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAECGRIIGIELLDHLIIGDQKFISLKEKGYV

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=35.2112676056338, Blast_Score=150, Evalue=4e-38,
Organism=Escherichia coli, GI1788997, Length=108, Percent_Identity=45.3703703703704, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI2367100, Length=139, Percent_Identity=37.410071942446, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788312, Length=137, Percent_Identity=37.2262773722628, Blast_Score=104, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2548_GEOTN (A4IRD9)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126638.1
- ProteinModelPortal:   A4IRD9
- SMR:   A4IRD9
- STRING:   A4IRD9
- GeneID:   4967474
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2548
- NMPDR:   fig|420246.5.peg.2455
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- PhylomeDB:   A4IRD9
- ProtClustDB:   PRK00024
- BioCyc:   GTHE420246:GTNG_2548-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25532; Mature: 25401

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWMIRDVPKDSRPRERLLASGPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLR
CCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLKDATVEEMTSIKGIGPTKAVQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
FLSQEHFVAIYLNTKNQVIHRKTVFIGSLNASIVHPREVFKEAIKRSAASVICVHNHPSG
HHCCCCEEEEEECCCCCEEEEHEEEEECCCCCEECHHHHHHHHHHHHHCEEEEEECCCCC
DPTPSREDIDVTKRLAECGRIIGIELLDHLIIGDQKFISLKEKGYV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHCCCCC
>Mature Secondary Structure 
TWMIRDVPKDSRPRERLLASGPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLR
CCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
LLKDATVEEMTSIKGIGPTKAVQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
FLSQEHFVAIYLNTKNQVIHRKTVFIGSLNASIVHPREVFKEAIKRSAASVICVHNHPSG
HHCCCCEEEEEECCCCCEEEEHEEEEECCCCCEECHHHHHHHHHHHHHCEEEEEECCCCC
DPTPSREDIDVTKRLAECGRIIGIELLDHLIIGDQKFISLKEKGYV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA