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The map label for this gene is ybeY [C]

Identifier: 138896065

GI number: 138896065

Start: 2535028

End: 2535498

Strand: Reverse

Name: ybeY [C]

Synonym: GTNG_2428

Alternate gene names: 138896065

Gene position: 2535498-2535028 (Counterclockwise)

Preceding gene: 138896066

Following gene: 138896064

Centisome position: 71.42

GC content: 54.56

Gene sequence:

>471_bases
ATGACGATTCAAATCGATTTTATCGATGAGACGAACGAAGTGACGGCCGAGCAAATCGAGACGCTCGAGCAACTGATTCG
CGAAGCGGCGGCCGTCGAGAACGTGCCGGAGGGGGCGGAAGTAAGCGTTTCGTTCGTGGATAACGAACGCATTCGTGTGA
TGAACCGCGATTACCGAGGCAAAGATGCTCCCACGGACGTGCTATCGTTTGCCCTTGAAGAGGAGGGGGAAGGAGAAATC
GACATCATCGGTGCTGATGTGCCACCGGTGCTCGGCGATATTATCATCTCCATCCCGAAGGCGAAGGAGCAGGCCGCAGA
ATACGGGCACTCGTTCATGCGCGAGCTCGGATTTTTGGCCGTGCACGGCTTTTTGCACTTGCTTGGCTATGACCACGAGA
CGGAAGAGGAGGAGAGAGTCATGTTTGCCAAGCAAGAGGAAATCTTAACACGGTTCGGGTTGACGAGATAG

Upstream 100 bases:

>100_bases
AGCTGGAAATCGTCGCTCGTTCGCTTTGTGAGACGTTAAACGGTGTCTTCCATTCGCGCATCGAATATCCGGAAGTACGA
AAGGAAAAGGTGAAGCATGC

Downstream 100 bases:

>100_bases
CCATGCGAGGCATACGGGAACGGGATCGTTTCGCTTGGGCTTGGGCAGGAATGAAGGCGGCGGTGAAGGAGGAGGCGCAT
TTGCGTTTCCACTTGGCGGC

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEGAEVSVSFVDNERIRVMNRDYRGKDAPTDVLSFALEEEGEGEI
DIIGADVPPVLGDIIISIPKAKEQAAEYGHSFMRELGFLAVHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLTR

Sequences:

>Translated_156_residues
MTIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEGAEVSVSFVDNERIRVMNRDYRGKDAPTDVLSFALEEEGEGEI
DIIGADVPPVLGDIIISIPKAKEQAAEYGHSFMRELGFLAVHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLTR
>Mature_155_residues
TIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEGAEVSVSFVDNERIRVMNRDYRGKDAPTDVLSFALEEEGEGEID
IIGADVPPVLGDIIISIPKAKEQAAEYGHSFMRELGFLAVHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLTR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Homo sapiens, GI54607072, Length=117, Percent_Identity=36.7521367521368, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786880, Length=108, Percent_Identity=37.037037037037, Blast_Score=70, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_GEOTN (A4IR19)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001126518.1
- ProteinModelPortal:   A4IR19
- SMR:   A4IR19
- STRING:   A4IR19
- GeneID:   4967354
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_2428
- NMPDR:   fig|420246.5.peg.2333
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   HGFLHLK
- PhylomeDB:   A4IR19
- ProtClustDB:   PRK00016
- BioCyc:   GTHE420246:GTNG_2428-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17566; Mature: 17435

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEGAEVSVSFVDNERIRVMNRDYRG
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCC
KDAPTDVLSFALEEEGEGEIDIIGADVPPVLGDIIISIPKAKEQAAEYGHSFMRELGFLA
CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLTR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIQIDFIDETNEVTAEQIETLEQLIREAAAVENVPEGAEVSVSFVDNERIRVMNRDYRG
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEECCCCCC
KDAPTDVLSFALEEEGEGEIDIIGADVPPVLGDIIISIPKAKEQAAEYGHSFMRELGFLA
CCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VHGFLHLLGYDHETEEEERVMFAKQEEILTRFGLTR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA