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The map label for this gene is sodA [H]

Identifier: 138896037

GI number: 138896037

Start: 2511823

End: 2512437

Strand: Reverse

Name: sodA [H]

Synonym: GTNG_2400

Alternate gene names: 138896037

Gene position: 2512437-2511823 (Counterclockwise)

Preceding gene: 138896041

Following gene: 138896036

Centisome position: 70.77

GC content: 51.38

Gene sequence:

>615_bases
ATGCCATTTGAACTGCCGGCATTGCCGTATGCGTACGATGCGCTCGAGCCGCATATCGACAAAGAAACGATGACCATTCA
CCACACGAAGCATCATAACACGTACGTGACGAACTTAAATGCAGCGCTTGAAGGACACGCTGATTTGCAAAACAAATCGC
TTGAAGAATTGCTCAGCAATTTGGAAGCCCTTCCTGAAAGCATTCGCACTGCAGTGCGCAACAACGGCGGCGGCCATGCG
AACCATTCGCTGTTCTGGACGATTTTGTCTCCAAACGGCGGTGGTGAGCCGACAGGCGAACTGGCTGAAGCCATCAACAA
AAAATTCGGTAGCTTTGCGGCGTTTAAAGACGAGTTTTCGAAAGCAGCCGCTGGCCGTTTTGGTTCCGGCTGGGCATGGC
TTGTCGTCAACAACGGCGAGCTGGAAATTACGAGCACGCCAAACCAAGACTCGCCGATCATGGAAGGCAAAACGCCGATC
CTCGGTTTGGACGTTTGGGAGCATGCTTACTACCTGAAATATCAAAACCGTCGTCCGGAATACATCGCGGCGTTCTGGAA
CGTCGTCAACTGGGACGAAGTAGCAAAACGATACAGCGAAGCGAAAGCAAAATAA

Upstream 100 bases:

>100_bases
CAGACAAGCAAATTCATTGAAACATTGTGGTAATTTTGGTAAGCTAATTTTACATGGACGGCACTACGTCCGCATTACAT
AACAAAAGGAGGAGATTTGC

Downstream 100 bases:

>100_bases
GTAGATCCACGATGAAAAAAGCGGGGCGAATGAGTCGCCCCGTTTTTTTCATTAACTTAAAAGTGCATAGCAGCAGCGGA
AATGGTCACACTACCGGATA

Product: manganese superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MPFELPALPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNAALEGHADLQNKSLEELLSNLEALPESIRTAVRNNGGGHA
NHSLFWTILSPNGGGEPTGELAEAINKKFGSFAAFKDEFSKAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPI
LGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDEVAKRYSEAKAK

Sequences:

>Translated_204_residues
MPFELPALPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNAALEGHADLQNKSLEELLSNLEALPESIRTAVRNNGGGHA
NHSLFWTILSPNGGGEPTGELAEAINKKFGSFAAFKDEFSKAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPI
LGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDEVAKRYSEAKAK
>Mature_203_residues
PFELPALPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNAALEGHADLQNKSLEELLSNLEALPESIRTAVRNNGGGHAN
HSLFWTILSPNGGGEPTGELAEAINKKFGSFAAFKDEFSKAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPIL
GLDVWEHAYYLKYQNRRPEYIAAFWNVVNWDEVAKRYSEAKAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=51.980198019802, Blast_Score=210, Evalue=7e-55,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=51.980198019802, Blast_Score=210, Evalue=7e-55,
Organism=Homo sapiens, GI67782309, Length=202, Percent_Identity=41.5841584158416, Blast_Score=151, Evalue=5e-37,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=59.6153846153846, Blast_Score=254, Evalue=2e-69,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=53.8071065989848, Blast_Score=209, Evalue=1e-55,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=42.2885572139304, Blast_Score=168, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=42.3645320197044, Blast_Score=165, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=42.3809523809524, Blast_Score=156, Evalue=2e-39,
Organism=Drosophila melanogaster, GI17136812, Length=202, Percent_Identity=46.5346534653465, Blast_Score=181, Evalue=2e-46,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22781; Mature: 22649

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFELPALPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNAALEGHADLQNKSLEELLSN
CCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCEEEEECCHHHCCCCCCCHHHHHHHHHH
LEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFAAFKDEFS
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
KAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPE
HHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCCH
YIAAFWNVVNWDEVAKRYSEAKAK
HHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PFELPALPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNAALEGHADLQNKSLEELLSN
CCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCEEEEECCHHHCCCCCCCHHHHHHHHHH
LEALPESIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINKKFGSFAAFKDEFS
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
KAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYLKYQNRRPE
HHHCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCCH
YIAAFWNVVNWDEVAKRYSEAKAK
HHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]