BacMap

Definition	Geobacillus thermodenitrificans NG80-2 chromosome, complete genome.
Accession	NC_009328
Length	3,550,319

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The map label for this gene is yybO [H]

Identifier: 138895590

GI number: 138895590

Start: 2066474

End: 2067802

Strand: Direct

Name: yybO [H]

Synonym: GTNG_1943

Alternate gene names: 138895590

Gene position: 2066474-2067802 (Clockwise)

Preceding gene: 138895584

Following gene: 138895602

Centisome position: 58.21

GC content: 51.54

Gene sequence:

>1329_bases
ATGAAGATGAAGAAGGTGAAAAAACGCCGCTGGGCGATCGCTTCTTTAATTGCCTTAGGAGTGATCGTCAACTACTTCGA
CCGCATTAATATGTCTGTCGGCATTAAACCGCTTTCTGAAGAATTTGACCTGACTCCAGGGCAGCTTGGCATTTTGTTGT
CCGCATTTGCTTGGTTATACGCCATTTTGCAAATCCCAGCCGGGGTCATCCTCGATAAAATCGGTGTCAAATGGGTGACG
CGTGTCGGAACGATCATTTGGACCGTTGCCTGTTTCCTCACCGCCATCGCCAACGGCCAAGGGCTCGTCATTTTGTCACG
CGTATTATTAGGAGTTGGGGAAGCGCCGTATTTCCCTTCCGCCGCTAAAGCGATCGGCCAATGGTTTCCGCGCCATGAGC
GATCGACGGCCATTTCCTTATATGACGCTCAGTCCAAGCTGTCGAATGCGATCGGTACCCCCATCATCGCTTGGATCATT
ACCGAGTGGGGCTGGCGGGCCGGCTTTTACGTGACAGCCTTGCTCAGTTTGATTTACGCCATCATTTTCTGGGCAACATA
CCGCGACCCGCATGAGGACAAACAGCTATCAAAAGAGGAGTATGACTACATCGTCCAAGGCGGGGCGCAAAAATCAGACG
AAACAGCCGGAAACGTTTGGAAAACGATTCGGTATCTGCTGACAAAGAAAAAAGTATGGGCGACGTTGATCGGTTTTGCC
GCCTACGGCTATTCGTGGTTTTTGTTCCTCACTTGGCTTCCTGGCTATTTAGCAACGGAAATGCATATGTCCATCTTAAA
ATCAGGATGGTACGCTTCGATTCCGTGGATCGTCGGCACGATCTCCGAAATCGTCATCGGCGGATGGCTCATCGACCGAT
TGGTGACCAAAGGAGGCAACTCCACGCGCGTGCGAAAAACGTTTCTTGTCATCGGGATGTTGCTCGGGCTATCCGTCATC
GGCGCCGCCTTTACGACGAACCCGAACATCGCCATTCTTTGCATTTCCATTGCGCTCGGCGGTTTAGTTATCACGTCATC
GATCGCCTACAGCATTCCGACGTTTATCGCTCCGCAAGGCACCGTCGGAACGTTAACCGGTCTTTTGACGTTCGGCAACA
ACTCGATGGCCATCGTCGCGCCGATCATTACGGGCTTTATTGTTCAAGCAACCGGCTCGTTTATGTACGCATTTCTCGTC
GCCGCACTCATTTTGCTTGCCGGCATTTTCAGCTACGTCTTTCTGCTGACGGATTTGGAGCCAATTGAGCCGATGGTTAA
GCCAGAAGCGGCGTCAAACGCAAACGCCCGACATGTGAAAGCACGATAA

Upstream 100 bases:

>100_bases
TATAGTAACTAAGTTACATACAATGGAACAATTATTTTTGCCTTTTGGCCAATAGTACAAACACTTTCATTCATCCTATC
TAAAACGTAAAGGACGGTGC

Downstream 100 bases:

>100_bases
CCTAAAAAACGCCTTCGCCCAAAATGGCCAAGGCGTTTTTTCATGATGCTTTGCCTCTTGTTCACTCACATATTAGTACA
GCTGCCTATCTTATCACGTC

Product: D-galactonate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKMKKVKKRRWAIASLIALGVIVNYFDRINMSVGIKPLSEEFDLTPGQLGILLSAFAWLYAILQIPAGVILDKIGVKWVT
RVGTIIWTVACFLTAIANGQGLVILSRVLLGVGEAPYFPSAAKAIGQWFPRHERSTAISLYDAQSKLSNAIGTPIIAWII
TEWGWRAGFYVTALLSLIYAIIFWATYRDPHEDKQLSKEEYDYIVQGGAQKSDETAGNVWKTIRYLLTKKKVWATLIGFA
AYGYSWFLFLTWLPGYLATEMHMSILKSGWYASIPWIVGTISEIVIGGWLIDRLVTKGGNSTRVRKTFLVIGMLLGLSVI
GAAFTTNPNIAILCISIALGGLVITSSIAYSIPTFIAPQGTVGTLTGLLTFGNNSMAIVAPIITGFIVQATGSFMYAFLV
AALILLAGIFSYVFLLTDLEPIEPMVKPEAASNANARHVKAR

Sequences:

>Translated_442_residues
MKMKKVKKRRWAIASLIALGVIVNYFDRINMSVGIKPLSEEFDLTPGQLGILLSAFAWLYAILQIPAGVILDKIGVKWVT
RVGTIIWTVACFLTAIANGQGLVILSRVLLGVGEAPYFPSAAKAIGQWFPRHERSTAISLYDAQSKLSNAIGTPIIAWII
TEWGWRAGFYVTALLSLIYAIIFWATYRDPHEDKQLSKEEYDYIVQGGAQKSDETAGNVWKTIRYLLTKKKVWATLIGFA
AYGYSWFLFLTWLPGYLATEMHMSILKSGWYASIPWIVGTISEIVIGGWLIDRLVTKGGNSTRVRKTFLVIGMLLGLSVI
GAAFTTNPNIAILCISIALGGLVITSSIAYSIPTFIAPQGTVGTLTGLLTFGNNSMAIVAPIITGFIVQATGSFMYAFLV
AALILLAGIFSYVFLLTDLEPIEPMVKPEAASNANARHVKAR
>Mature_442_residues
MKMKKVKKRRWAIASLIALGVIVNYFDRINMSVGIKPLSEEFDLTPGQLGILLSAFAWLYAILQIPAGVILDKIGVKWVT
RVGTIIWTVACFLTAIANGQGLVILSRVLLGVGEAPYFPSAAKAIGQWFPRHERSTAISLYDAQSKLSNAIGTPIIAWII
TEWGWRAGFYVTALLSLIYAIIFWATYRDPHEDKQLSKEEYDYIVQGGAQKSDETAGNVWKTIRYLLTKKKVWATLIGFA
AYGYSWFLFLTWLPGYLATEMHMSILKSGWYASIPWIVGTISEIVIGGWLIDRLVTKGGNSTRVRKTFLVIGMLLGLSVI
GAAFTTNPNIAILCISIALGGLVITSSIAYSIPTFIAPQGTVGTLTGLLTFGNNSMAIVAPIITGFIVQATGSFMYAFLV
AALILLAGIFSYVFLLTDLEPIEPMVKPEAASNANARHVKAR

Specific function: Intake Of Galactonate Into The Cell. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI9966811, Length=464, Percent_Identity=25.6465517241379, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI154350196, Length=403, Percent_Identity=26.0545905707196, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI6912666, Length=371, Percent_Identity=27.2237196765499, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI9945322, Length=464, Percent_Identity=24.3534482758621, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI21322234, Length=446, Percent_Identity=24.6636771300448, Blast_Score=99, Evalue=9e-21,
Organism=Homo sapiens, GI4885441, Length=402, Percent_Identity=25.3731343283582, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI5031955, Length=307, Percent_Identity=26.3843648208469, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI148743791, Length=394, Percent_Identity=22.8426395939086, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI223718438, Length=445, Percent_Identity=23.5955056179775, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI148728191, Length=331, Percent_Identity=23.8670694864048, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI87082320, Length=428, Percent_Identity=32.0093457943925, Blast_Score=220, Evalue=2e-58,
Organism=Escherichia coli, GI1789515, Length=435, Percent_Identity=29.8850574712644, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1789152, Length=443, Percent_Identity=31.1512415349887, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI2367379, Length=429, Percent_Identity=28.6713286713287, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI2367193, Length=356, Percent_Identity=28.3707865168539, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI87082071, Length=391, Percent_Identity=23.0179028132992, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788573, Length=404, Percent_Identity=23.7623762376238, Blast_Score=72, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115533554, Length=411, Percent_Identity=25.7907542579075, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI115533556, Length=411, Percent_Identity=25.7907542579075, Blast_Score=98, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17560030, Length=319, Percent_Identity=25.3918495297806, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32565914, Length=355, Percent_Identity=25.3521126760563, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32565916, Length=260, Percent_Identity=26.9230769230769, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17554962, Length=363, Percent_Identity=25.8953168044077, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI193205400, Length=328, Percent_Identity=24.390243902439, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17554148, Length=356, Percent_Identity=25.561797752809, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17535049, Length=442, Percent_Identity=24.4343891402715, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI71997452, Length=448, Percent_Identity=25.6696428571429, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17561498, Length=283, Percent_Identity=26.5017667844523, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17566884, Length=280, Percent_Identity=27.8571428571429, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17561502, Length=285, Percent_Identity=27.719298245614, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI32567120, Length=285, Percent_Identity=27.719298245614, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560966, Length=311, Percent_Identity=24.7588424437299, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17552542, Length=352, Percent_Identity=25.5681818181818, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17540458, Length=374, Percent_Identity=24.5989304812834, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71991448, Length=366, Percent_Identity=25.1366120218579, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71991453, Length=366, Percent_Identity=25.1366120218579, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115534562, Length=285, Percent_Identity=25.6140350877193, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115534558, Length=274, Percent_Identity=22.6277372262774, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17561500, Length=285, Percent_Identity=25.6140350877193, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569727, Length=292, Percent_Identity=25, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17557432, Length=293, Percent_Identity=25.5972696245734, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115534564, Length=293, Percent_Identity=25.5972696245734, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32566049, Length=455, Percent_Identity=22.8571428571429, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71991162, Length=167, Percent_Identity=25.1497005988024, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI86561091, Length=206, Percent_Identity=23.7864077669903, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI115533871, Length=315, Percent_Identity=25.0793650793651, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI28573299, Length=399, Percent_Identity=26.0651629072682, Blast_Score=118, Evalue=9e-27,
Organism=Drosophila melanogaster, GI24648416, Length=440, Percent_Identity=26.5909090909091, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI21356189, Length=440, Percent_Identity=26.5909090909091, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI24580790, Length=411, Percent_Identity=27.2506082725061, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583789, Length=358, Percent_Identity=24.8603351955307, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI20130135, Length=487, Percent_Identity=25.6673511293634, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24655271, Length=457, Percent_Identity=25.382932166302, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24584153, Length=272, Percent_Identity=24.6323529411765, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24639764, Length=338, Percent_Identity=26.3313609467456, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI45550460, Length=410, Percent_Identity=24.1463414634146, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24654215, Length=466, Percent_Identity=23.6051502145923, Blast_Score=96, Evalue=7e-20,
Organism=Drosophila melanogaster, GI19922400, Length=460, Percent_Identity=23.9130434782609, Blast_Score=95, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24655255, Length=381, Percent_Identity=23.6220472440945, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24641682, Length=421, Percent_Identity=23.9904988123515, Blast_Score=89, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24653727, Length=396, Percent_Identity=27.5252525252525, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI62484226, Length=440, Percent_Identity=24.3181818181818, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI28573708, Length=417, Percent_Identity=23.2613908872902, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI28573707, Length=417, Percent_Identity=23.2613908872902, Blast_Score=86, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24658658, Length=434, Percent_Identity=22.3502304147465, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI20130167, Length=444, Percent_Identity=23.1981981981982, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI281361682, Length=395, Percent_Identity=22.7848101265823, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI19920686, Length=416, Percent_Identity=22.8365384615385, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24658674, Length=439, Percent_Identity=23.9179954441913, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24658666, Length=424, Percent_Identity=23.5849056603774, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45550495, Length=441, Percent_Identity=23.5827664399093, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24658689, Length=476, Percent_Identity=22.8991596638655, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI20129235, Length=364, Percent_Identity=24.7252747252747, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45552797, Length=428, Percent_Identity=23.3644859813084, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45550364, Length=466, Percent_Identity=22.3175965665236, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 48389; Mature: 48389

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKKVKKRRWAIASLIALGVIVNYFDRINMSVGIKPLSEEFDLTPGQLGILLSAFAWLY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHCCCCCHHHHHHHHHHHHHH
AILQIPAGVILDKIGVKWVTRVGTIIWTVACFLTAIANGQGLVILSRVLLGVGEAPYFPS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCH
AAKAIGQWFPRHERSTAISLYDAQSKLSNAIGTPIIAWIITEWGWRAGFYVTALLSLIYA
HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
IIFWATYRDPHEDKQLSKEEYDYIVQGGAQKSDETAGNVWKTIRYLLTKKKVWATLIGFA
HHHHHHCCCCCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYGYSWFLFLTWLPGYLATEMHMSILKSGWYASIPWIVGTISEIVIGGWLIDRLVTKGGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCC
STRVRKTFLVIGMLLGLSVIGAAFTTNPNIAILCISIALGGLVITSSIAYSIPTFIAPQG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHCCCCC
TVGTLTGLLTFGNNSMAIVAPIITGFIVQATGSFMYAFLVAALILLAGIFSYVFLLTDLE
CHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIEPMVKPEAASNANARHVKAR
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKMKKVKKRRWAIASLIALGVIVNYFDRINMSVGIKPLSEEFDLTPGQLGILLSAFAWLY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHCCCCCHHHHHHHHHHHHHH
AILQIPAGVILDKIGVKWVTRVGTIIWTVACFLTAIANGQGLVILSRVLLGVGEAPYFPS
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCH
AAKAIGQWFPRHERSTAISLYDAQSKLSNAIGTPIIAWIITEWGWRAGFYVTALLSLIYA
HHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
IIFWATYRDPHEDKQLSKEEYDYIVQGGAQKSDETAGNVWKTIRYLLTKKKVWATLIGFA
HHHHHHCCCCCCHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AYGYSWFLFLTWLPGYLATEMHMSILKSGWYASIPWIVGTISEIVIGGWLIDRLVTKGGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCCC
STRVRKTFLVIGMLLGLSVIGAAFTTNPNIAILCISIALGGLVITSSIAYSIPTFIAPQG
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHCCCCC
TVGTLTGLLTFGNNSMAIVAPIITGFIVQATGSFMYAFLVAALILLAGIFSYVFLLTDLE
CHHHHHHHHEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PIEPMVKPEAASNANARHVKAR
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]