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The map label for this gene is rhgT [H]

Identifier: 138895537

GI number: 138895537

Start: 2012609

End: 2013403

Strand: Direct

Name: rhgT [H]

Synonym: GTNG_1887

Alternate gene names: 138895537

Gene position: 2012609-2013403 (Clockwise)

Preceding gene: 138895536

Following gene: 138895553

Centisome position: 56.69

GC content: 51.95

Gene sequence:

>795_bases
TTGTGCTCCGTCATCATCGCCATTGGTGTCGTTCTAATGGTGAGGACAACAATCGTCGGAGACGCAGCCAAAACAAGAAG
GGAAACGGTCATCGTCATCTATTTGGCCGGCGACTCCACTGTCGCCGCCGCCCCCCGCTCCCGCGCTCCGCGAGCTGGAT
GGGGGGAGATGCTTGACGACTGGTTTGACGATCGCGTGATCGTCAAAAACATGGCCGCTTCCGGGCGAAGCGCGAAAAGT
TTTGCCGAGGAAGGATGGCTCGACCACATTTTGCGTGACATCAAAAAAGGTGATTATTTGTTTATTCAGTTTGGCCATAA
TGACGAAAAAATGAACGATTCAGCTCGTTATACCGAACCGTTCACCTCTTATCAAGCGTACTTAAAACGGTATATTGACG
GCGCCCGCGCCAAAGGGGCGATTCCTGTTCTCATTACTCCCGTCGAGCGGCGGCGCTTTTCTGCTGATGGGCGAGCTCTC
GATTCCCACGGACTTTACCCTGCTGCCATGAAAGCACTCGGAAAAAATGAACACGTTCCGGTCATTGATTTGACGGCAAA
AAGCAAACAGCGGTTTGAACAGCTTGGGCCGGAACGGACGAAGCGGTGGTTTTTATGGCTTAAACCAGGCGAACACCCCA
ATTACCCGAAAGGCATCAAAGACAATACCCACTTTCATGAACGGGGGGCGAAAGAAATCGCCCGTTTAGTCGTTGAAGGG
ATCGTTGAGCTTGATCTCCCTCTTCGCCACCACCTCATCCGTTCGCCGAAACAAGAATCTGTACGAAATCGTTAA

Upstream 100 bases:

>100_bases
CTCGCAAGCCACGATAACAACGAAACGAATCGCCGGTGAACAGCAAGCAGACTGTTGTCGAGTAGGAGGAACTTGATTGA
AAGGAAAACAAGCGGCTTTT

Downstream 100 bases:

>100_bases
GCCGAGCCGCCTCCTGCCCTTGGCCGCACGCGTCATGACATCAACAACGCTCCAAGTGCATTTCCTCCGCACTCGCCCGA
TCCACTAGGACGGGCGCTTT

Product: putative rhamnogalacturonan acetylesterase

Products: NA

Alternate protein names: RGAE [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MCSVIIAIGVVLMVRTTIVGDAAKTRRETVIVIYLAGDSTVAAAPRSRAPRAGWGEMLDDWFDDRVIVKNMAASGRSAKS
FAEEGWLDHILRDIKKGDYLFIQFGHNDEKMNDSARYTEPFTSYQAYLKRYIDGARAKGAIPVLITPVERRRFSADGRAL
DSHGLYPAAMKALGKNEHVPVIDLTAKSKQRFEQLGPERTKRWFLWLKPGEHPNYPKGIKDNTHFHERGAKEIARLVVEG
IVELDLPLRHHLIRSPKQESVRNR

Sequences:

>Translated_264_residues
MCSVIIAIGVVLMVRTTIVGDAAKTRRETVIVIYLAGDSTVAAAPRSRAPRAGWGEMLDDWFDDRVIVKNMAASGRSAKS
FAEEGWLDHILRDIKKGDYLFIQFGHNDEKMNDSARYTEPFTSYQAYLKRYIDGARAKGAIPVLITPVERRRFSADGRAL
DSHGLYPAAMKALGKNEHVPVIDLTAKSKQRFEQLGPERTKRWFLWLKPGEHPNYPKGIKDNTHFHERGAKEIARLVVEG
IVELDLPLRHHLIRSPKQESVRNR
>Mature_264_residues
MCSVIIAIGVVLMVRTTIVGDAAKTRRETVIVIYLAGDSTVAAAPRSRAPRAGWGEMLDDWFDDRVIVKNMAASGRSAKS
FAEEGWLDHILRDIKKGDYLFIQFGHNDEKMNDSARYTEPFTSYQAYLKRYIDGARAKGAIPVLITPVERRRFSADGRAL
DSHGLYPAAMKALGKNEHVPVIDLTAKSKQRFEQLGPERTKRWFLWLKPGEHPNYPKGIKDNTHFHERGAKEIARLVVEG
IVELDLPLRHHLIRSPKQESVRNR

Specific function: May play role in the degradation of type I rhamnogalacturonan derived from plant cell walls. This enzyme has a broad substrate specificity, and shows strong preference for glucose pentaacetate, beta-naphthylacetate, and p-nitrophenyl acetate (pNPA). Also

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'GDSL' lipolytic enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 29901; Mature: 29901

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCSVIIAIGVVLMVRTTIVGDAAKTRRETVIVIYLAGDSTVAAAPRSRAPRAGWGEMLDD
CHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCHHHHHHH
WFDDRVIVKNMAASGRSAKSFAEEGWLDHILRDIKKGDYLFIQFGHNDEKMNDSARYTEP
HHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
FTSYQAYLKRYIDGARAKGAIPVLITPVERRRFSADGRALDSHGLYPAAMKALGKNEHVP
HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCC
VIDLTAKSKQRFEQLGPERTKRWFLWLKPGEHPNYPKGIKDNTHFHERGAKEIARLVVEG
EEEECCHHHHHHHHHCHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IVELDLPLRHHLIRSPKQESVRNR
HHHCCCHHHHHHHCCCCHHHHCCC
>Mature Secondary Structure
MCSVIIAIGVVLMVRTTIVGDAAKTRRETVIVIYLAGDSTVAAAPRSRAPRAGWGEMLDD
CHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEEECCCEEECCCCCCCCCCCHHHHHHH
WFDDRVIVKNMAASGRSAKSFAEEGWLDHILRDIKKGDYLFIQFGHNDEKMNDSARYTEP
HHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
FTSYQAYLKRYIDGARAKGAIPVLITPVERRRFSADGRALDSHGLYPAAMKALGKNEHVP
HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCC
VIDLTAKSKQRFEQLGPERTKRWFLWLKPGEHPNYPKGIKDNTHFHERGAKEIARLVVEG
EEEECCHHHHHHHHHCHHHHCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
IVELDLPLRHHLIRSPKQESVRNR
HHHCCCHHHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]