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The map label for this gene is ytcP [H]

Identifier: 138895427

GI number: 138895427

Start: 1874048

End: 1874938

Strand: Reverse

Name: ytcP [H]

Synonym: GTNG_1771

Alternate gene names: 138895427

Gene position: 1874938-1874048 (Counterclockwise)

Preceding gene: 138895428

Following gene: 138895426

Centisome position: 52.81

GC content: 40.18

Gene sequence:

>891_bases
ATGCATCATCATTATCAAAAAAGCTTGTCCTACAAAATATTTACTATTTTTAACTATACTTTTTTAACGGTTGCTGCTTT
GCTTTGTATTTTGCCTCTTATTCATATTTTAGCTGTTTCTTTTAGCGGTAGTGCAGCAGCAACGGCCAATCTTGTCGGGC
TTTGGCCAGTCGATTTTACGCTTGATGCGTACGAAAAAACGATCGGGAACGAAAACTTTTTGCGCTCCCTCTGGAATTCC
TTTTTACGGGTCGTATTAGGGACGGCCATTTCCATGGCAGTCATGTTGTGCGCAGCTTATCCGTTATCCAAAAGCGACAA
AGCATTTCGTGGACGAAAAATTTATATGTGGTTTTTCGTTTTTACTATGCTGTTCCATGGTGGGCTTGTTCCGACCTATA
TGGTTGTGACAAAGCTCGGATTGACTGATACGATTTGGGCGCTCATTTTGCCGTCTGCGGTCAGCGCGTTCAACTTAATT
TTGCTTATTAACTTTTTCCGTACATCGGTGCCAAAATCGCTTGAGGAAGCTGCTTTAATGGATGGGGCAAATCACTTCAC
GATTTTCTGGAAAATTTATTTACCAATCTCTGTGCCAGCGATTGCGACGATTTCACTCTTTACAATGGTATTCCATTGGA
ATTCATGGTTTGACGGCATAATTTATATGTCCGATGTCAAGCATTATCCGTTGTCCACTTTTTTGCAAACGATTATTGTC
CAACAAGACTTTACTAAAATGAGTGTTGATGCAGAGACATTACAAAACTTGTCCGAACGAACAGTGAAAGCAGCACAAAT
TTTTATTGCTGCGTTGCCAATGCTAGCCGTTTATCCATTTGTACAAAAATTCTTTGTCAAGGGGATTGTCTTAGGAGCGG
AAAAAGAATAA

Upstream 100 bases:

>100_bases
GGTTATTTAAATCGATCATTAGCTTTATTTTAGTAGTGACAGGATATCGTCTCGCCTATAAGTATGCTAACTATAAAATT
TTTTAAGGGAGGGGAGGCAT

Downstream 100 bases:

>100_bases
GAGGGGGAAGTGAACATGCCAACGGAATACGAACCTTGCTGGCTAAGATATGTGCAAAATGATAAGTATAAAGATAATCA
ATTGGTGTTTACAACGATCG

Product: integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MHHHYQKSLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFTLDAYEKTIGNENFLRSLWNS
FLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFVFTMLFHGGLVPTYMVVTKLGLTDTIWALILPSAVSAFNLI
LLINFFRTSVPKSLEEAALMDGANHFTIFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIV
QQDFTKMSVDAETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEKE

Sequences:

>Translated_296_residues
MHHHYQKSLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFTLDAYEKTIGNENFLRSLWNS
FLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFVFTMLFHGGLVPTYMVVTKLGLTDTIWALILPSAVSAFNLI
LLINFFRTSVPKSLEEAALMDGANHFTIFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIV
QQDFTKMSVDAETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEKE
>Mature_296_residues
MHHHYQKSLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFTLDAYEKTIGNENFLRSLWNS
FLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFVFTMLFHGGLVPTYMVVTKLGLTDTIWALILPSAVSAFNLI
LLINFFRTSVPKSLEEAALMDGANHFTIFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIV
QQDFTKMSVDAETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEKE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=288, Percent_Identity=25.6944444444444, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33421; Mature: 33421

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHHYQKSLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFT
CCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCEEEECCCCCC
LDAYEKTIGNENFLRSLWNSFLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHH
FTMLFHGGLVPTYMVVTKLGLTDTIWALILPSAVSAFNLILLINFFRTSVPKSLEEAALM
HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DGANHFTIFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIV
CCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCHHCCEEEECCCCCCCHHHHHHHHHH
QQDFTKMSVDAETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEKE
HHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHHHYQKSLSYKIFTIFNYTFLTVAALLCILPLIHILAVSFSGSAAATANLVGLWPVDFT
CCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCEEEECCCCCC
LDAYEKTIGNENFLRSLWNSFLRVVLGTAISMAVMLCAAYPLSKSDKAFRGRKIYMWFFV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHH
FTMLFHGGLVPTYMVVTKLGLTDTIWALILPSAVSAFNLILLINFFRTSVPKSLEEAALM
HHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
DGANHFTIFWKIYLPISVPAIATISLFTMVFHWNSWFDGIIYMSDVKHYPLSTFLQTIIV
CCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCHHCCEEEECCCCCCCHHHHHHHHHH
QQDFTKMSVDAETLQNLSERTVKAAQIFIAALPMLAVYPFVQKFFVKGIVLGAEKE
HHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]