Click here to switch to the map view.

The map label for this gene is xynA

Identifier: 138895417

GI number: 138895417

Start: 1862421

End: 1863644

Strand: Direct

Name: xynA

Synonym: GTNG_1761

Alternate gene names: NA

Gene position: 1862421-1863644 (Clockwise)

Preceding gene: 138895408

Following gene: 138895470

Centisome position: 52.46

GC content: 43.14

Gene sequence:

>1224_bases
ATGTTGAAAAGATCGCGAAAAGCGATAATAGTTGGATTCTCATTTATGCTGTTGCTCCCTTTAGGGATGACGAATGCATT
GGCAAAAACTGAACAATCATACGCTAAAAAGCCTCAAATCAGCGCATTGCATGCCCCACAATTGGACCAGCGCTACAAAG
ATTCATTCACTATTGGTGCGGCTGTTGAACCTTATCAGCTACTAAACGAGAAAGACGCACAAATGCTAAAACGCCATTTT
AACAGCATTGTCGCTGAGAACGTTATGAAGCCGATTAATATTCAACCGGAAGAAGGAAAATTCAATTTTGCTGAGGCGGA
TCAAATCGTTCGGTTTGCTAAAAAACACCATATGGATATCCGTTTCCACACGCTCGTTTGGCATAGCCAAGTACCTCAAT
GGTTCTTTCTTGACAAGGAAGGCCAACCAATGGTCAATGAAACGGACCCTGTGAAACGCGAACAAAATAAACAGCTGTTA
TTAAAACGGATCGAAACCCATATTAAAACGATTGTCGAGCGGTATAAAGATGACATCAAATATTGGGACGTTGTAAATGA
GGTAGTCGGGGATGATGGAGAATTGCGCGATTCCCCATGGTATCAAATCGCTGGCATCGATTATATTAAGGTAGCGTTCC
AAACAGCGAGAAAATATGGCGGCAACAAGATTAAACTTTACATTAATGATTACAATACGGAAGTTGAACCAAAGCGAAGC
GCTCTTTATAACTTGGTGAAACAATTAAAAGAAGAGGGCATTCCCATTGATGGTATTGGCCATCAGTCCCACATCCAAAT
TGACTGGCCTTCTGAAGAGGAAATCGAAAAAACGATTATCATGTTTGCCGATCTAGGGTTAGACAACCAAATTACTGAGC
TGGATGTGAGCATGTACGGCTGGCCGCCGCGGGCTTACCTGTCGTATGACGCCATTCCGGAGCAAAAGTTTTTGGACCAA
GCGGATCGCTATGATCGATTGTTTAAGCTGTATGAAAAACTCAGCGATAAAATCAGTAACGTCACCTTCTGGGGCATCGC
CGACAACCATACGTGGCTCGACAGTCGAGCGGATGTTTACTATGATACTGATGGGAATGTGATTGTAGACCCGAAAGCCC
CATATACGAGAGTGGAAAAAGGGAATGGAAAAGATGCGCCATTTGTGTTCGACCCCGAATACAACGTAAAACCTGCGTAT
TGGGCTATTATCGATCATAAGTGA

Upstream 100 bases:

>100_bases
ATTACAGGTTGGAACAATGAAAGGAAGGGAGTGATAAGCGCTTTCTGTTTTTTATGTTGTTTGGCTATGAATCATAACTA
TACAAGGAGGAGACAAAATC

Downstream 100 bases:

>100_bases
GGCTTATCACAAATTGAAAGAAGGGTGTCTCAAAAGTAATGAGACACCCTTCTTTATGACTATATATACGTGATGAACAA
TTCCAACAAAACAATATCCT

Product: xylanase T-6

Products: NA

Alternate protein names: Xylanase; 1,4-beta-D-xylan xylanohydrolase [H]

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLKRSRKAIIVGFSFMLLLPLGMTNALAKTEQSYAKKPQISALHAPQLDQRYKDSFTIGAAVEPYQLLNEKDAQMLKRHF
NSIVAENVMKPINIQPEEGKFNFAEADQIVRFAKKHHMDIRFHTLVWHSQVPQWFFLDKEGQPMVNETDPVKREQNKQLL
LKRIETHIKTIVERYKDDIKYWDVVNEVVGDDGELRDSPWYQIAGIDYIKVAFQTARKYGGNKIKLYINDYNTEVEPKRS
ALYNLVKQLKEEGIPIDGIGHQSHIQIDWPSEEEIEKTIIMFADLGLDNQITELDVSMYGWPPRAYLSYDAIPEQKFLDQ
ADRYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSRADVYYDTDGNVIVDPKAPYTRVEKGNGKDAPFVFDPEYNVKPAY
WAIIDHK

Sequences:

>Translated_407_residues
MLKRSRKAIIVGFSFMLLLPLGMTNALAKTEQSYAKKPQISALHAPQLDQRYKDSFTIGAAVEPYQLLNEKDAQMLKRHF
NSIVAENVMKPINIQPEEGKFNFAEADQIVRFAKKHHMDIRFHTLVWHSQVPQWFFLDKEGQPMVNETDPVKREQNKQLL
LKRIETHIKTIVERYKDDIKYWDVVNEVVGDDGELRDSPWYQIAGIDYIKVAFQTARKYGGNKIKLYINDYNTEVEPKRS
ALYNLVKQLKEEGIPIDGIGHQSHIQIDWPSEEEIEKTIIMFADLGLDNQITELDVSMYGWPPRAYLSYDAIPEQKFLDQ
ADRYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSRADVYYDTDGNVIVDPKAPYTRVEKGNGKDAPFVFDPEYNVKPAY
WAIIDHK
>Mature_407_residues
MLKRSRKAIIVGFSFMLLLPLGMTNALAKTEQSYAKKPQISALHAPQLDQRYKDSFTIGAAVEPYQLLNEKDAQMLKRHF
NSIVAENVMKPINIQPEEGKFNFAEADQIVRFAKKHHMDIRFHTLVWHSQVPQWFFLDKEGQPMVNETDPVKREQNKQLL
LKRIETHIKTIVERYKDDIKYWDVVNEVVGDDGELRDSPWYQIAGIDYIKVAFQTARKYGGNKIKLYINDYNTEVEPKRS
ALYNLVKQLKEEGIPIDGIGHQSHIQIDWPSEEEIEKTIIMFADLGLDNQITELDVSMYGWPPRAYLSYDAIPEQKFLDQ
ADRYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSRADVYYDTDGNVIVDPKAPYTRVEKGNGKDAPFVFDPEYNVKPAY
WAIIDHK

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 47399; Mature: 47399

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRSRKAIIVGFSFMLLLPLGMTNALAKTEQSYAKKPQISALHAPQLDQRYKDSFTIGA
CCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEECC
AVEPYQLLNEKDAQMLKRHFNSIVAENVMKPINIQPEEGKFNFAEADQIVRFAKKHHMDI
CCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
RFHTLVWHSQVPQWFFLDKEGQPMVNETDPVKREQNKQLLLKRIETHIKTIVERYKDDIK
EEEEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWDVVNEVVGDDGELRDSPWYQIAGIDYIKVAFQTARKYGGNKIKLYINDYNTEVEPKRS
HHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
ALYNLVKQLKEEGIPIDGIGHQSHIQIDWPSEEEIEKTIIMFADLGLDNQITELDVSMYG
HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHEEEEEEECCCCCCEEEEEEEEEC
WPPRAYLSYDAIPEQKFLDQADRYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSRADVY
CCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCCCEE
YDTDGNVIVDPKAPYTRVEKGNGKDAPFVFDPEYNVKPAYWAIIDHK
EECCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECC
>Mature Secondary Structure
MLKRSRKAIIVGFSFMLLLPLGMTNALAKTEQSYAKKPQISALHAPQLDQRYKDSFTIGA
CCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCEEECC
AVEPYQLLNEKDAQMLKRHFNSIVAENVMKPINIQPEEGKFNFAEADQIVRFAKKHHMDI
CCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
RFHTLVWHSQVPQWFFLDKEGQPMVNETDPVKREQNKQLLLKRIETHIKTIVERYKDDIK
EEEEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWDVVNEVVGDDGELRDSPWYQIAGIDYIKVAFQTARKYGGNKIKLYINDYNTEVEPKRS
HHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
ALYNLVKQLKEEGIPIDGIGHQSHIQIDWPSEEEIEKTIIMFADLGLDNQITELDVSMYG
HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHEEEEEEECCCCCCEEEEEEEEEC
WPPRAYLSYDAIPEQKFLDQADRYDRLFKLYEKLSDKISNVTFWGIADNHTWLDSRADVY
CCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCEECCCCCEE
YDTDGNVIVDPKAPYTRVEKGNGKDAPFVFDPEYNVKPAYWAIIDHK
EECCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8031084; 8328796 [H]