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The map label for this gene is xynB [H]

Identifier: 138895414

GI number: 138895414

Start: 1858372

End: 1859979

Strand: Reverse

Name: xynB [H]

Synonym: GTNG_1758

Alternate gene names: 138895414

Gene position: 1859979-1858372 (Counterclockwise)

Preceding gene: 138895415

Following gene: 138895413

Centisome position: 52.39

GC content: 45.96

Gene sequence:

>1608_bases
ATGGTTAAAATTAAAAATCCCATTTTAACTGGTTTTCATCCCGATCCGTCCATTTGCCGGGCGGGAGATGACTATTACAT
TGCCGTTTCGACGTTTGAATGGTTCCCGGGGGTGAGAATTTACCATTCGAAAGATTTAAAGAATTGGCGTTTAGTAGCGC
GTCCATTAAACCGGTTAAGTCAATTAAATATGATTGGAAACCCAGATTCTGGAGGGATTTGGGCTCCGCACCTGTCATAT
AGCGACGGGAAGTTTTGGCTCATTTATACGGATGTGAAAGTCGTCGAAGGCCAGTGGAAGGATGGTCATAACTATCTCGT
GACGTGTGATACGATCGATGGCGAGTGGTCCGATCCCATTTATTTGAATAGCTCTGGGTTTGACCCGTCTTTATTTCATG
ATGAGGACGGAAGAAAATATTTAGTGAACATGTATTGGGATCATCGAGTGGGACATCATCCATTTTATGGTATTGTACTT
CAAGAATACAGTGTTGAACAGAAAAAATTGATTGGTGAGCCGAAGATCATTTTCAAAGGAACGGACCTACGAATTACAGA
AGGACCACATTTGTATAAAATCGACGGTTATTATTATTTACTGACGGCGGAAGGGGGAACGCGGTACAACCATGCGGCAA
CGATTGCCCGATCAGCGTCACTGTATGGTCCGTATGAGGTGCATCCGGAAAATCCGTTGATTACGTCTTGGCCTTATCCG
CGCAACCCGCTGCAAAAGGCTGGTCATGCTTCGATTGTCCATACTCATACAGATGAATGGTTTCTTGTGCATCTAACCGG
CCGGCCGCTGCCAAGAGAAGGACAGCCGCTATTGGATCACCGCGGCTATTGCCCGCTCGGACGTGAAACAGCGATTCAGC
GGCTTGAATGGAAAGATGGATGGCCTTATGTAGTCGGAGGAAACGGGCCTTCGTTAGAAATCGACGGGCCGAACGTTGAG
GAAGTTCCGTGGGAAAGAGATTACGATGAAAAAGATGATTTTGATGGCGATACATTAAACCACCATTTTCAAACATTACG
AATTCCTTTAGGAGAAGACATCGCCACCTTAAAAGCCCGTCCGGGACATTTGCGGCTATACGGAAGAGAATCGCTGACTT
CCCGATTTACACAGGCGTTTGTCGCTAGACGATGGCAGCATTTTCACTTCATAGCGGAAACGAAAGTTGCGTTTCGTCCA
ACGACCATCCAACAATCGGCTGGGCTAGTGAACTACTATAATACGCAAAACTGGACAACGCTGCAATTGACATGGCATGA
GGAAAAAGGACGGATCCTCGAATTAATGGCATGCGACCATCTTGTGGTTGAACAGCCCTTGCGCGGCCGAGAAATTGTTG
TCCCCGATGATGTCGAGTATGTGTATTTACGAGTCAACGTACAAATGACCACGTACAAATATTCGTATTCTTTCGACGGG
GTGGATTGGAAGGAGATTCCTGTCACCTTTGAATCATATAAACTATCAGACGACTATATCAAAAGCAATGCTGCGTTTAC
CGGGGCGTTTGTGGGCATGCATTGCCGGGACGGTTCCGGGCAAAACAATTACGCGGATTTTGACTACTTTTTGTACAAAG
AGTTATAG

Upstream 100 bases:

>100_bases
CAAATTGTTGGCCTAACAAGTGTTGGCCGACAAAAAATAAAGTGTAAATGTATGCCATTCTTCGAAAAAGTGACATTCTA
TCTTTTTAGGAGGGTTAGAC

Downstream 100 bases:

>100_bases
AATACTTTGTTTATATGATAGACAAACAAATATGAAAGCGTTATAATAAAAACTAGCACAAGTCATTTTCACTATTCGTG
ATTAAGGGGGATCTAGACAT

Product: xylan 1,4-beta-xylosidase (beta xylosidase)

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MVKIKNPILTGFHPDPSICRAGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGIWAPHLSY
SDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGEWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVGHHPFYGIVL
QEYSVEQKKLIGEPKIIFKGTDLRITEGPHLYKIDGYYYLLTAEGGTRYNHAATIARSASLYGPYEVHPENPLITSWPYP
RNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLDHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPNVE
EVPWERDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFIAETKVAFRP
TTIQQSAGLVNYYNTQNWTTLQLTWHEEKGRILELMACDHLVVEQPLRGREIVVPDDVEYVYLRVNVQMTTYKYSYSFDG
VDWKEIPVTFESYKLSDDYIKSNAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL

Sequences:

>Translated_535_residues
MVKIKNPILTGFHPDPSICRAGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGIWAPHLSY
SDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGEWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVGHHPFYGIVL
QEYSVEQKKLIGEPKIIFKGTDLRITEGPHLYKIDGYYYLLTAEGGTRYNHAATIARSASLYGPYEVHPENPLITSWPYP
RNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLDHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPNVE
EVPWERDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFIAETKVAFRP
TTIQQSAGLVNYYNTQNWTTLQLTWHEEKGRILELMACDHLVVEQPLRGREIVVPDDVEYVYLRVNVQMTTYKYSYSFDG
VDWKEIPVTFESYKLSDDYIKSNAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL
>Mature_535_residues
MVKIKNPILTGFHPDPSICRAGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLSQLNMIGNPDSGGIWAPHLSY
SDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGEWSDPIYLNSSGFDPSLFHDEDGRKYLVNMYWDHRVGHHPFYGIVL
QEYSVEQKKLIGEPKIIFKGTDLRITEGPHLYKIDGYYYLLTAEGGTRYNHAATIARSASLYGPYEVHPENPLITSWPYP
RNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLDHRGYCPLGRETAIQRLEWKDGWPYVVGGNGPSLEIDGPNVE
EVPWERDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKARPGHLRLYGRESLTSRFTQAFVARRWQHFHFIAETKVAFRP
TTIQQSAGLVNYYNTQNWTTLQLTWHEEKGRILELMACDHLVVEQPLRGREIVVPDDVEYVYLRVNVQMTTYKYSYSFDG
VDWKEIPVTFESYKLSDDYIKSNAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=536, Percent_Identity=56.5298507462687, Blast_Score=628, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 61919; Mature: 61919

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKIKNPILTGFHPDPSICRAGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLS
CEEECCCEEECCCCCHHHEECCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
QLNMIGNPDSGGIWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGEWSDPI
HCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCE
YLNSSGFDPSLFHDEDGRKYLVNMYWDHRVGHHPFYGIVLQEYSVEQKKLIGEPKIIFKG
EECCCCCCCCCEECCCCCEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHCCCCEEEEEC
TDLRITEGPHLYKIDGYYYLLTAEGGTRYNHAATIARSASLYGPYEVHPENPLITSWPYP
CCEEECCCCEEEEECCEEEEEECCCCCCCCHHEEEEECCCCCCCEEECCCCCEEECCCCC
RNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLDHRGYCPLGRETAIQRLEWKDG
CCHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHEEECCCC
WPYVVGGNGPSLEIDGPNVEEVPWERDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKAR
CCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC
PGHLRLYGRESLTSRFTQAFVARRWQHFHFIAETKVAFRPTTIQQSAGLVNYYNTQNWTT
CCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEECEEEECCCEECCCCCEEEEECCCCEEE
LQLTWHEEKGRILELMACDHLVVEQPLRGREIVVPDDVEYVYLRVNVQMTTYKYSYSFDG
EEEEEECCCCCEEEEEECCHHHHCCCCCCCEEECCCCCEEEEEEEEEEEEEEEEEEEECC
VDWKEIPVTFESYKLSDDYIKSNAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL
CCHHCCCEEEEEEECCHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MVKIKNPILTGFHPDPSICRAGDDYYIAVSTFEWFPGVRIYHSKDLKNWRLVARPLNRLS
CEEECCCEEECCCCCHHHEECCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
QLNMIGNPDSGGIWAPHLSYSDGKFWLIYTDVKVVEGQWKDGHNYLVTCDTIDGEWSDPI
HCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCE
YLNSSGFDPSLFHDEDGRKYLVNMYWDHRVGHHPFYGIVLQEYSVEQKKLIGEPKIIFKG
EECCCCCCCCCEECCCCCEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHCCCCEEEEEC
TDLRITEGPHLYKIDGYYYLLTAEGGTRYNHAATIARSASLYGPYEVHPENPLITSWPYP
CCEEECCCCEEEEECCEEEEEECCCCCCCCHHEEEEECCCCCCCEEECCCCCEEECCCCC
RNPLQKAGHASIVHTHTDEWFLVHLTGRPLPREGQPLLDHRGYCPLGRETAIQRLEWKDG
CCHHHHCCCCEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCHHHHHHEEECCCC
WPYVVGGNGPSLEIDGPNVEEVPWERDYDEKDDFDGDTLNHHFQTLRIPLGEDIATLKAR
CCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECC
PGHLRLYGRESLTSRFTQAFVARRWQHFHFIAETKVAFRPTTIQQSAGLVNYYNTQNWTT
CCEEEEECCHHHHHHHHHHHHHHHHHHEEEEEECEEEECCCEECCCCCEEEEECCCCEEE
LQLTWHEEKGRILELMACDHLVVEQPLRGREIVVPDDVEYVYLRVNVQMTTYKYSYSFDG
EEEEEECCCCCEEEEEECCHHHHCCCCCCCEEECCCCCEEEEEEEEEEEEEEEEEEEECC
VDWKEIPVTFESYKLSDDYIKSNAAFTGAFVGMHCRDGSGQNNYADFDYFLYKEL
CCHHCCCEEEEEEECCHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]