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The map label for this gene is yocS [H]

Identifier: 138895397

GI number: 138895397

Start: 1841472

End: 1842431

Strand: Direct

Name: yocS [H]

Synonym: GTNG_1741

Alternate gene names: 138895397

Gene position: 1841472-1842431 (Clockwise)

Preceding gene: 138895381

Following gene: 138895401

Centisome position: 51.87

GC content: 51.56

Gene sequence:

>960_bases
GTGAACACAATCGGGAGAATCAGCAACTTTGTCGGCAATACGTTTGCGATTTGGGTGCTTCTCTTCGGCGCACTTGCCTT
TTTCGTTCCAAGCGCGTTTACGTGGATCGCCCCGTATATTGTGCCGCTCTTGGGGATTGTGATGTTTGGCATGGGGTTGA
CGCTGTCGGCGAACGATTTCAAAGAAGTATTCAAGCGCCCGCTGGATGTGCTCATCGGCGTCATTGCCCAATTTCTCATC
ATGCCGCTCATTGCGTTTTTGCTCGCCTACTTTTTGCCGGTTTCGCGCGAAGTGGCGCTCGGCATTATTTTAGTCGGCTG
TTGCCCGGGCGGAACGGCATCCAACGTCATGACATACTTGGCGAAAGGAGATACGGCGCTGTCGGTTGCCGTCACCTCTG
TGTCTACGATTTTAGCGCCGATTTTGACGCCTTCACTCATTTTGCTTTTAGCCGGGAAATGGCTGTCCGTATCCGCTGCC
GCTTTATTTTGGTCGATCGTCAAAGTCGTACTGATTCCGATTCTTTTAGGACTTATCGCGCAAACACTTTTCCAAAAGCA
AGTAAAAGCGTGCATCCCGGCATTGCCGCTCGTTTCTGTCATCGCCATCGTTGCTATCGTCGCTGCCGTCGTCGGACAAA
ACCAAGCAGCCATTGCCAAAAGCGGACTCCTTATTTTTCTTATTGTCGTTGCCCATAACGGGTTGGGCTTGTTGATTGGG
TACTGGTTTGCCAAACTGTTTCGCCTGTCGCCGCCAAAGCAAAAAGCGATTTCCATCGAAGTTGGCATGCAAAACTCTGG
ACTTGGTGCGGCCTTGGCGACCGCCCATTTTTCGCCGCTCGCTGCCGTTCCGAGCGCCCTTTTCAGCGTCTGGCACAATA
TTTCTGGTCCGATCGTCGCGACATACTTCCGCAAACAAGCAAACCACCAAACAGCGAATGACAAAACGATTTCCACTTAA

Upstream 100 bases:

>100_bases
ACATTTTTTCAAAATTCTCTGCAAGATTAGTTGAACTTTTCGAAAAAATATATATAATTTCTTGTATATCTTTCCCATCT
TTGCTCAAGGAGGAAATGCA

Downstream 100 bases:

>100_bases
CTTCTCACACTTTGTCTAGCAGCAAGGAAAAAGCTGTCTCCTGAAGTGAACGACCATCTTTCGGAGACAGCTTTTTTATG
CCCGCCACCACTCACGTTCC

Product: putative transmembrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MNTIGRISNFVGNTFAIWVLLFGALAFFVPSAFTWIAPYIVPLLGIVMFGMGLTLSANDFKEVFKRPLDVLIGVIAQFLI
MPLIAFLLAYFLPVSREVALGIILVGCCPGGTASNVMTYLAKGDTALSVAVTSVSTILAPILTPSLILLLAGKWLSVSAA
ALFWSIVKVVLIPILLGLIAQTLFQKQVKACIPALPLVSVIAIVAIVAAVVGQNQAAIAKSGLLIFLIVVAHNGLGLLIG
YWFAKLFRLSPPKQKAISIEVGMQNSGLGAALATAHFSPLAAVPSALFSVWHNISGPIVATYFRKQANHQTANDKTIST

Sequences:

>Translated_319_residues
MNTIGRISNFVGNTFAIWVLLFGALAFFVPSAFTWIAPYIVPLLGIVMFGMGLTLSANDFKEVFKRPLDVLIGVIAQFLI
MPLIAFLLAYFLPVSREVALGIILVGCCPGGTASNVMTYLAKGDTALSVAVTSVSTILAPILTPSLILLLAGKWLSVSAA
ALFWSIVKVVLIPILLGLIAQTLFQKQVKACIPALPLVSVIAIVAIVAAVVGQNQAAIAKSGLLIFLIVVAHNGLGLLIG
YWFAKLFRLSPPKQKAISIEVGMQNSGLGAALATAHFSPLAAVPSALFSVWHNISGPIVATYFRKQANHQTANDKTIST
>Mature_319_residues
MNTIGRISNFVGNTFAIWVLLFGALAFFVPSAFTWIAPYIVPLLGIVMFGMGLTLSANDFKEVFKRPLDVLIGVIAQFLI
MPLIAFLLAYFLPVSREVALGIILVGCCPGGTASNVMTYLAKGDTALSVAVTSVSTILAPILTPSLILLLAGKWLSVSAA
ALFWSIVKVVLIPILLGLIAQTLFQKQVKACIPALPLVSVIAIVAIVAAVVGQNQAAIAKSGLLIFLIVVAHNGLGLLIG
YWFAKLFRLSPPKQKAISIEVGMQNSGLGAALATAHFSPLAAVPSALFSVWHNISGPIVATYFRKQANHQTANDKTIST

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=243, Percent_Identity=28.8065843621399, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI4506971, Length=294, Percent_Identity=27.891156462585, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI37537552, Length=285, Percent_Identity=24.9122807017544, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI24308414, Length=245, Percent_Identity=30.6122448979592, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI58219066, Length=243, Percent_Identity=31.2757201646091, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI215422370, Length=227, Percent_Identity=28.6343612334802, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI9790143, Length=227, Percent_Identity=28.6343612334802, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI215422368, Length=227, Percent_Identity=28.6343612334802, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI115533076, Length=120, Percent_Identity=37.5, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33739; Mature: 33739

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIGRISNFVGNTFAIWVLLFGALAFFVPSAFTWIAPYIVPLLGIVMFGMGLTLSANDF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
KEVFKRPLDVLIGVIAQFLIMPLIAFLLAYFLPVSREVALGIILVGCCPGGTASNVMTYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCHHHHHHHH
AKGDTALSVAVTSVSTILAPILTPSLILLLAGKWLSVSAAALFWSIVKVVLIPILLGLIA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLFQKQVKACIPALPLVSVIAIVAIVAAVVGQNQAAIAKSGLLIFLIVVAHNGLGLLIG
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHHHHH
YWFAKLFRLSPPKQKAISIEVGMQNSGLGAALATAHFSPLAAVPSALFSVWHNISGPIVA
HHHHHHHHCCCCCHHEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
TYFRKQANHQTANDKTIST
HHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNTIGRISNFVGNTFAIWVLLFGALAFFVPSAFTWIAPYIVPLLGIVMFGMGLTLSANDF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
KEVFKRPLDVLIGVIAQFLIMPLIAFLLAYFLPVSREVALGIILVGCCPGGTASNVMTYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCHHHHHHHH
AKGDTALSVAVTSVSTILAPILTPSLILLLAGKWLSVSAAALFWSIVKVVLIPILLGLIA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTLFQKQVKACIPALPLVSVIAIVAIVAAVVGQNQAAIAKSGLLIFLIVVAHNGLGLLIG
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHCCCHHHHHH
YWFAKLFRLSPPKQKAISIEVGMQNSGLGAALATAHFSPLAAVPSALFSVWHNISGPIVA
HHHHHHHHCCCCCHHEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHH
TYFRKQANHQTANDKTIST
HHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]