Click here to switch to the map view.

The map label for this gene is ypgR [H]

Identifier: 138895333

GI number: 138895333

Start: 1767173

End: 1768324

Strand: Reverse

Name: ypgR [H]

Synonym: GTNG_1677

Alternate gene names: 138895333

Gene position: 1768324-1767173 (Counterclockwise)

Preceding gene: 138895334

Following gene: 138895332

Centisome position: 49.81

GC content: 53.39

Gene sequence:

>1152_bases
TTGCGCATTAAAGCGATTGAGCCGACACCAAGTCCGAACACGATGAAAATATTACTTGATGAAGAACTGCCTTCCGGCAT
GCGCCATAACTACAAACCCGACAACATCGGCGAAGCACCGCCGCTCATTCAAACGTTGATGCGCATTAATGGAGTAAAAG
GCATTTACCATGTCGCCGACTTTTTGGCCATTGAGCGCCATCCGAAGTACGATTGGCGCGACATATTGGCGAACGTGCGT
GAAGTGTTCGGCGAAGAAGCAGACGACGGAGCCGAGGCAAAGCCGAAGGTGAATGAACATTTCGGTGAAGTGAAAGTATT
TGTGCAAATGTTGTATGGTTTGCCGATGCAAGTGAAACTGATCGATGGCGAGCGCGAGCATCGCGTCGGGCTGCCGCAGC
CGTTTATCGATGCGGTCATCGAAGCGCAAAAGTATGCCGACAACATTGTCCTTGAGCGCAAATGGGTGGAAAAAGGGGTG
CGCTACGGCACGTTCGACGAAATTGGACGCGAAGTGGTCGATGAGCTGTCGGCTGCCTATCCGCCAGAGCGACTGGAGCG
GATCGTCAATATGTTCCGCCACGGAGAGCAGGAAAAAACGGCGCAGAAGCGGCCAGGTATCAAAGTGACAAGCGAGATGC
TCGACGATCCAGACTGGCGGAAACGGTACGCCGCGCTTGAGCAAATGGCGGAGCCGACCGAAGACGACATCCCCGTGTTA
GCCAAAGCCCTGAAAGATGAGAAAATGGCCATTCGCCGCCTAGCGACTGCGTATCTAGGCATGATCGGCGGCAAACAGGT
GCTGCCGTATTTGTATGAAGCGTTGAAAGACCCGGCGGTTGCTGTCCGTCGCACGGCCGGCGACTGTTTGTCCGACATCG
GCGACCCAGAAGCGATTCCAGCGATGACGGAAGCGTTAAAAGATGAAAGCAAGCTCGTCCGCTGGCGCGCGGCTATGTTT
TTGTATGAAGTCGGCGATGAATCGGCGCTCCCAGCGTTAAAAGCGGCGGAAAACGATCCGGAATTTGAGGTCAGCTTGCA
AGTAAAAATGGCCATCGAACGGATCGAAGGCGGCGAAGAGGCGAAAGGCTCGGTTTGGAAACAAATGACTGAAAGCCGAA
AAAAAGAAAACAAGACAGAAGAGGAAAAATAG

Upstream 100 bases:

>100_bases
GGTCGAGTTGTTGCCCGCTTCGCTCCGCAAACGAAGCCGAGCGAGTTGAAAAAGGAAATTGAAAAATTGTTGTAGTCTTT
TTGTGAAGGAGGGATGACGG

Downstream 100 bases:

>100_bases
GCGCGCGGATGGGCGCGCCTATATTCTTTGGGGCACTGAAAGCAAATGATGACGTGGCCACAGTGGAGCTGGCTGTCGGA
GAGATTCAGTGATTTCCAAG

Product: HEAT repeat-containing PBS lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRIKAIEPTPSPNTMKILLDEELPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVADFLAIERHPKYDWRDILANVR
EVFGEEADDGAEAKPKVNEHFGEVKVFVQMLYGLPMQVKLIDGEREHRVGLPQPFIDAVIEAQKYADNIVLERKWVEKGV
RYGTFDEIGREVVDELSAAYPPERLERIVNMFRHGEQEKTAQKRPGIKVTSEMLDDPDWRKRYAALEQMAEPTEDDIPVL
AKALKDEKMAIRRLATAYLGMIGGKQVLPYLYEALKDPAVAVRRTAGDCLSDIGDPEAIPAMTEALKDESKLVRWRAAMF
LYEVGDESALPALKAAENDPEFEVSLQVKMAIERIEGGEEAKGSVWKQMTESRKKENKTEEEK

Sequences:

>Translated_383_residues
MRIKAIEPTPSPNTMKILLDEELPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVADFLAIERHPKYDWRDILANVR
EVFGEEADDGAEAKPKVNEHFGEVKVFVQMLYGLPMQVKLIDGEREHRVGLPQPFIDAVIEAQKYADNIVLERKWVEKGV
RYGTFDEIGREVVDELSAAYPPERLERIVNMFRHGEQEKTAQKRPGIKVTSEMLDDPDWRKRYAALEQMAEPTEDDIPVL
AKALKDEKMAIRRLATAYLGMIGGKQVLPYLYEALKDPAVAVRRTAGDCLSDIGDPEAIPAMTEALKDESKLVRWRAAMF
LYEVGDESALPALKAAENDPEFEVSLQVKMAIERIEGGEEAKGSVWKQMTESRKKENKTEEEK
>Mature_383_residues
MRIKAIEPTPSPNTMKILLDEELPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVADFLAIERHPKYDWRDILANVR
EVFGEEADDGAEAKPKVNEHFGEVKVFVQMLYGLPMQVKLIDGEREHRVGLPQPFIDAVIEAQKYADNIVLERKWVEKGV
RYGTFDEIGREVVDELSAAYPPERLERIVNMFRHGEQEKTAQKRPGIKVTSEMLDDPDWRKRYAALEQMAEPTEDDIPVL
AKALKDEKMAIRRLATAYLGMIGGKQVLPYLYEALKDPAVAVRRTAGDCLSDIGDPEAIPAMTEALKDESKLVRWRAAMF
LYEVGDESALPALKAAENDPEFEVSLQVKMAIERIEGGEEAKGSVWKQMTESRKKENKTEEEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR014824
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS; PF08712 Nfu_N [H]

EC number: NA

Molecular weight: Translated: 43459; Mature: 43459

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIKAIEPTPSPNTMKILLDEELPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVAD
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
FLAIERHPKYDWRDILANVREVFGEEADDGAEAKPKVNEHFGEVKVFVQMLYGLPMQVKL
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
IDGEREHRVGLPQPFIDAVIEAQKYADNIVLERKWVEKGVRYGTFDEIGREVVDELSAAY
ECCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
PPERLERIVNMFRHGEQEKTAQKRPGIKVTSEMLDDPDWRKRYAALEQMAEPTEDDIPVL
CHHHHHHHHHHHHCCCHHHHHHHCCCCEEHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHH
AKALKDEKMAIRRLATAYLGMIGGKQVLPYLYEALKDPAVAVRRTAGDCLSDIGDPEAIP
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
AMTEALKDESKLVRWRAAMFLYEVGDESALPALKAAENDPEFEVSLQVKMAIERIEGGEE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEHHHHHHHHHCCCCC
AKGSVWKQMTESRKKENKTEEEK
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRIKAIEPTPSPNTMKILLDEELPSGMRHNYKPDNIGEAPPLIQTLMRINGVKGIYHVAD
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
FLAIERHPKYDWRDILANVREVFGEEADDGAEAKPKVNEHFGEVKVFVQMLYGLPMQVKL
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
IDGEREHRVGLPQPFIDAVIEAQKYADNIVLERKWVEKGVRYGTFDEIGREVVDELSAAY
ECCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
PPERLERIVNMFRHGEQEKTAQKRPGIKVTSEMLDDPDWRKRYAALEQMAEPTEDDIPVL
CHHHHHHHHHHHHCCCHHHHHHHCCCCEEHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHH
AKALKDEKMAIRRLATAYLGMIGGKQVLPYLYEALKDPAVAVRRTAGDCLSDIGDPEAIP
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH
AMTEALKDESKLVRWRAAMFLYEVGDESALPALKAAENDPEFEVSLQVKMAIERIEGGEE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEEEEHHHHHHHHHCCCCC
AKGSVWKQMTESRKKENKTEEEK
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]