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The map label for this gene is nrnB [H]

Identifier: 138895285

GI number: 138895285

Start: 1714946

End: 1716187

Strand: Reverse

Name: nrnB [H]

Synonym: GTNG_1629

Alternate gene names: 138895285

Gene position: 1716187-1714946 (Counterclockwise)

Preceding gene: 138895286

Following gene: 138895284

Centisome position: 48.34

GC content: 52.33

Gene sequence:

>1242_bases
ATGATTAAATTATTTACCGACAGCGATTTAGACGGCATCGGCTGCGGACTGCTTGCGAAGCTGGCGTTTACGGAAGTCAA
CATTTCGTTTTGCTCCTATCGGAATCTAGATGAGCGAGTCACCCAGTTTCTGCAAAGCGAAGAAGCAGACAACGCCATGC
TGTTTATCACCGACTTGGCCGTCGGCAAAGACGTCGAAGAACAGCTCGCCGAACGGGCCAAGCGCGGCGGTCACGTGCAA
GTCATCGATCACCACGTGACGGCACTTCATTTCAATGACTATCCGTGGGGCTGGGTCGTGCCGACTGATGATGACGGCAA
AAAAACGTCCGCGACCTCGCTCTTTTACGACTATCTCGTCCGTGAAGGGAAACTAGCACCAAGCGACTCATTAGCAACGT
TCGTCGAGCTCGTCCGCCAATACGATACATGGGAATGGGAAGAAAACGGGAATCTGCAAGCAAAACGGCTTAATGATTTA
TTGACGATTTTAGGGCTCGACGGCTTTTGGGATACAATGAGCGAGCGACTTGCCTCCGGCGAACCGTTCACCTTGACCGA
AACAGAAGAGCTGATTTTGGATATGGAAGAAAAGAAGATCCAGCGCTACATCCGGCAAAAACAAAAGCAGCTCGTCCAAC
GCTCGCTCGGTGATTATTGCATCGGCGTTGTATTTGCTGAGCGGCATTTGTCGGAACTCGGCAACGCCTTATCGAAACGA
TACCCTCATCTCGACTTGATTGCCATGGTCAATATGGGAACGAAACATATCGGCTTTCGCACCATTCACGACGACGTCAA
TGTTGCTGAGTTCGCTAAACAGTTTGGCGGCGGCGGCCATCCGAAAGCGTCCGGCTGTTTTGTTGATGACACGACGTTCC
CACTCTTTGTCGTCGAGACGTTCCCGCTATTGCCGGTTTACGGCGATGCGGAACAAAATCAGCTGAACCAACGGGACGAA
GCCGAAGGAACGTTTTGGACGAATCATCATGGCCAATGGTGGCTGAGCCGACGGACGGAACAAGGATGGACCTTGTATGC
CGATGGGGGAGAGACTCGCACATTCCCTGAAGAAACGATAGGGGAACGCTGGTTGAAGCGGCAGTTTGCTGCAGGGCTCG
CCCACGATGCCACTGTGCTAGAATTTTTAAGCGCACGGCTCGGGCGGGACAAAGATACGATTCAAGCCGACTACCCAGCA
GCCGTCAAGCAATATAAGCAACAAACCGGCATCGAGCGTTGA

Upstream 100 bases:

>100_bases
CGCGTCTTTGTGCCACATGTCAGCGAACTGACGGACCGGCTGATTCCGCTTTTGAAAACGTGGTTGCAAAAAAGCTTGTA
ATAAAAAAGGATGGGAAGCG

Downstream 100 bases:

>100_bases
TGCCGGTTTTTATATGCTTGAAAAAGGGCACCCTCTCCCTGTTTAGAAGATTAGAGGAAAAGCAGCTATTTCTCCAAAAT
CGTCTGTTCTTGCATGTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NanoRNAse B [H]

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MIKLFTDSDLDGIGCGLLAKLAFTEVNISFCSYRNLDERVTQFLQSEEADNAMLFITDLAVGKDVEEQLAERAKRGGHVQ
VIDHHVTALHFNDYPWGWVVPTDDDGKKTSATSLFYDYLVREGKLAPSDSLATFVELVRQYDTWEWEENGNLQAKRLNDL
LTILGLDGFWDTMSERLASGEPFTLTETEELILDMEEKKIQRYIRQKQKQLVQRSLGDYCIGVVFAERHLSELGNALSKR
YPHLDLIAMVNMGTKHIGFRTIHDDVNVAEFAKQFGGGGHPKASGCFVDDTTFPLFVVETFPLLPVYGDAEQNQLNQRDE
AEGTFWTNHHGQWWLSRRTEQGWTLYADGGETRTFPEETIGERWLKRQFAAGLAHDATVLEFLSARLGRDKDTIQADYPA
AVKQYKQQTGIER

Sequences:

>Translated_413_residues
MIKLFTDSDLDGIGCGLLAKLAFTEVNISFCSYRNLDERVTQFLQSEEADNAMLFITDLAVGKDVEEQLAERAKRGGHVQ
VIDHHVTALHFNDYPWGWVVPTDDDGKKTSATSLFYDYLVREGKLAPSDSLATFVELVRQYDTWEWEENGNLQAKRLNDL
LTILGLDGFWDTMSERLASGEPFTLTETEELILDMEEKKIQRYIRQKQKQLVQRSLGDYCIGVVFAERHLSELGNALSKR
YPHLDLIAMVNMGTKHIGFRTIHDDVNVAEFAKQFGGGGHPKASGCFVDDTTFPLFVVETFPLLPVYGDAEQNQLNQRDE
AEGTFWTNHHGQWWLSRRTEQGWTLYADGGETRTFPEETIGERWLKRQFAAGLAHDATVLEFLSARLGRDKDTIQADYPA
AVKQYKQQTGIER
>Mature_413_residues
MIKLFTDSDLDGIGCGLLAKLAFTEVNISFCSYRNLDERVTQFLQSEEADNAMLFITDLAVGKDVEEQLAERAKRGGHVQ
VIDHHVTALHFNDYPWGWVVPTDDDGKKTSATSLFYDYLVREGKLAPSDSLATFVELVRQYDTWEWEENGNLQAKRLNDL
LTILGLDGFWDTMSERLASGEPFTLTETEELILDMEEKKIQRYIRQKQKQLVQRSLGDYCIGVVFAERHLSELGNALSKR
YPHLDLIAMVNMGTKHIGFRTIHDDVNVAEFAKQFGGGGHPKASGCFVDDTTFPLFVVETFPLLPVYGDAEQNQLNQRDE
AEGTFWTNHHGQWWLSRRTEQGWTLYADGGETRTFPEETIGERWLKRQFAAGLAHDATVLEFLSARLGRDKDTIQADYPA
AVKQYKQQTGIER

Specific function: Degrades RNA oligonucleotides with a length of 5 nucleotides in a 3'- to 5'-direction. Less active on shorter RNA oligonucleotides and on those with a length of 24 nucleotides. Prefers RNA oligonucleotides containing adenines rather than cytosines [H]

COG id: COG2404

COG function: function code R; Predicted phosphohydrolase (DHH superfamily)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156 [H]

Pfam domain/function: PF02272 DHHA1 [H]

EC number: NA

Molecular weight: Translated: 47002; Mature: 47002

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00778 HIS_ACID_PHOSPHAT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLFTDSDLDGIGCGLLAKLAFTEVNISFCSYRNLDERVTQFLQSEEADNAMLFITDLA
CEEEEECCCCCCCHHHHHHHHHHHHEEEHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECC
VGKDVEEQLAERAKRGGHVQVIDHHVTALHFNDYPWGWVVPTDDDGKKTSATSLFYDYLV
CCCCHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHH
REGKLAPSDSLATFVELVRQYDTWEWEENGNLQAKRLNDLLTILGLDGFWDTMSERLASG
HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
EPFTLTETEELILDMEEKKIQRYIRQKQKQLVQRSLGDYCIGVVFAERHLSELGNALSKR
CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPHLDLIAMVNMGTKHIGFRTIHDDVNVAEFAKQFGGGGHPKASGCFVDDTTFPLFVVET
CCCEEEEHEECCCCHHCCCEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEC
FPLLPVYGDAEQNQLNQRDEAEGTFWTNHHGQWWLSRRTEQGWTLYADGGETRTFPEETI
CCCCEEECCCHHHHCCCCCCCCCCEEECCCCCEEECCCCCCCCEEEECCCCCCCCCHHHH
GERWLKRQFAAGLAHDATVLEFLSARLGRDKDTIQADYPAAVKQYKQQTGIER
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIKLFTDSDLDGIGCGLLAKLAFTEVNISFCSYRNLDERVTQFLQSEEADNAMLFITDLA
CEEEEECCCCCCCHHHHHHHHHHHHEEEHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECC
VGKDVEEQLAERAKRGGHVQVIDHHVTALHFNDYPWGWVVPTDDDGKKTSATSLFYDYLV
CCCCHHHHHHHHHHCCCEEEEEECEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHH
REGKLAPSDSLATFVELVRQYDTWEWEENGNLQAKRLNDLLTILGLDGFWDTMSERLASG
HCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
EPFTLTETEELILDMEEKKIQRYIRQKQKQLVQRSLGDYCIGVVFAERHLSELGNALSKR
CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YPHLDLIAMVNMGTKHIGFRTIHDDVNVAEFAKQFGGGGHPKASGCFVDDTTFPLFVVET
CCCEEEEHEECCCCHHCCCEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEEEEEC
FPLLPVYGDAEQNQLNQRDEAEGTFWTNHHGQWWLSRRTEQGWTLYADGGETRTFPEETI
CCCCEEECCCHHHHCCCCCCCCCCEEECCCCCEEECCCCCCCCEEEECCCCCCCCCHHHH
GERWLKRQFAAGLAHDATVLEFLSARLGRDKDTIQADYPAAVKQYKQQTGIER
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]