Click here to switch to the map view.

The map label for this gene is 138895235

Identifier: 138895235

GI number: 138895235

Start: 1661042

End: 1661245

Strand: Reverse

Name: 138895235

Synonym: GTNG_1575

Alternate gene names: NA

Gene position: 1661245-1661042 (Counterclockwise)

Preceding gene: 138895239

Following gene: 138895234

Centisome position: 46.79

GC content: 37.75

Gene sequence:

>204_bases
GTGAGAAACAATCTTAAAGTTGCCCGTATCCAAGCAAACCTGACCCAACAACAACTGGCAGAAAAAGTCGGGGTAACTCG
ACAAACGATCAGTTTAATCGAAAAAGGAAAATACAATCCTACTTTAAAATTGTGCCTCGAAATTTGTTATGCGCTTAATA
AAACGTTAGATGAAATTTTTTGGGTAGAAAAGGGAGAGTGGTGA

Upstream 100 bases:

>100_bases
AAATTTTTCATCCTTAATGTAATATATATATTGAATTATGTAATATATATTGTTTAAAATGTAATATATAAATTACATTC
AGGGAGGGGTCGTTGGAATT

Downstream 100 bases:

>100_bases
AATTGCAAAAAATAAAAGACGAACGATTACTATTAAAAAATCTGCAAAATTTACGAATCGCCTACATGTTACAGACGATT
GGCATCATCGGAATCTTGGG

Product: PbsX family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MRNNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIFWVEKGEW

Sequences:

>Translated_67_residues
MRNNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIFWVEKGEW
>Mature_67_residues
MRNNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIFWVEKGEW

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 7794; Mature: 7794

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF
CCCCCEEHHHHHHCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
WVEKGEW
HCCCCCC
>Mature Secondary Structure
MRNNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF
CCCCCEEHHHHHHCHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
WVEKGEW
HCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]