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The map label for this gene is ypsC [H]

Identifier: 138895053

GI number: 138895053

Start: 1480589

End: 1481725

Strand: Direct

Name: ypsC [H]

Synonym: GTNG_1391

Alternate gene names: 138895053

Gene position: 1480589-1481725 (Clockwise)

Preceding gene: 138895052

Following gene: 138895054

Centisome position: 41.7

GC content: 55.15

Gene sequence:

>1137_bases
ATGAAATCATTTTCCATCATTGCGACGGCTGCGATGGGGCTCGAGTCGGTTGTTGCCGAAGAAGTGCGACGGCTCGGCTA
CGAATGCCGGGTGGAGAACGGCAAAGTGGCGTTCGAAGGCGATGCGCTCGCCATTTGCCGAGCCAACCTTTGGCTGCGCA
CCGCCGACCGCGTGAAACTGAAAGTTGGCGAATTTCGAGCGACGACGTTCGAGGAGCTGTTTGAACAGACGAAAGCATTG
CCGTGGGCCGATTATTTGCCGAAAGACGCTGAGTTTCCGGTCATCGGGAAATCGGTGAAGTCGACGTTGTTTAGCATTTC
AGACTGTCAAGCTATCGTCAAAAAAGCGGTCGTGGAAAGTTTAAAAGAGCGCTACCACCTGTCATGGTTTCCCGAAACCG
GCCCGCTTTGCCGCATTGAAGTAGCCCTTCATAAAGACATTGCCACGTTGACAATTGATACAAGCGGTGTCGGGTTGCAT
AAGCGCGGCTACCGTGCTCGTCAAGGAGAAGCGCCGCTTCGGGAAACGCTTGCCGCTGCCTTAGTATTGCTCACGAACTG
GACGCCGGATCGCCCGTTTGTCGATCCGTTTTGCGGTTCGGGCACGATCGCCATCGAAGCGGCGCTCATCGGGCAAAACA
TCGCCCCTGGGTTTAACCGCGATTTCGTTTCTGAACAATGGCCTTGGATCGGGGAGCGCGCATGGAATGAAGCACGCCAA
GAAGTGGAAGATATGGCACGCTATGATGAGCCATTGGATATTTGCGGGATTGACCTTGACCCACACATGGTGGAAATGGC
CAAGGCGAATGCAGCCGAAGCTGGGTTGGCCGATCTCATTTCTTTTCAAACAGGACGGGCGGAACAGTTTCGGACAGATA
AATCGTACGGGGTGATTGTCAGTAATCCGCCATACGGTGAACGGCTCGGCGAACGGCGGGAGGTCGAAGCCCTCTACCGC
GCCATCGGCCGCACTTTCTCCGCCTTAGACACATGGTCGGTATACATTTTAACTGCCCATCGCGGCTTTGAAACTCATTA
TGGCCGCCCGGCGACGAAGCGGCGCAAGCTGTTTAATGGCTTTATTGAGACGCATTACTATCAATATTGGGGGCCGCGGC
CGCCACGCCGAAGCTAG

Upstream 100 bases:

>100_bases
TGAAGGAGGGCTTTTCGTTTGCGTGTTTTTCGCAACTAGGTGGATATAATGGAAATATGTCCAATTGGTGCGATACATAC
CGTTTGCGAGGGGGAATAGA

Downstream 100 bases:

>100_bases
AAGTTGACTTCTCGACGGTCATCCATCATAATATAATCTTGTTACTAGAATTAAGGCGCGCAACGATGTGGTTGCGCGCT
TATGCATGATGATGCCGGGG

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKSFSIIATAAMGLESVVAEEVRRLGYECRVENGKVAFEGDALAICRANLWLRTADRVKLKVGEFRATTFEELFEQTKAL
PWADYLPKDAEFPVIGKSVKSTLFSISDCQAIVKKAVVESLKERYHLSWFPETGPLCRIEVALHKDIATLTIDTSGVGLH
KRGYRARQGEAPLRETLAAALVLLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEQWPWIGERAWNEARQ
EVEDMARYDEPLDICGIDLDPHMVEMAKANAAEAGLADLISFQTGRAEQFRTDKSYGVIVSNPPYGERLGERREVEALYR
AIGRTFSALDTWSVYILTAHRGFETHYGRPATKRRKLFNGFIETHYYQYWGPRPPRRS

Sequences:

>Translated_378_residues
MKSFSIIATAAMGLESVVAEEVRRLGYECRVENGKVAFEGDALAICRANLWLRTADRVKLKVGEFRATTFEELFEQTKAL
PWADYLPKDAEFPVIGKSVKSTLFSISDCQAIVKKAVVESLKERYHLSWFPETGPLCRIEVALHKDIATLTIDTSGVGLH
KRGYRARQGEAPLRETLAAALVLLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEQWPWIGERAWNEARQ
EVEDMARYDEPLDICGIDLDPHMVEMAKANAAEAGLADLISFQTGRAEQFRTDKSYGVIVSNPPYGERLGERREVEALYR
AIGRTFSALDTWSVYILTAHRGFETHYGRPATKRRKLFNGFIETHYYQYWGPRPPRRS
>Mature_378_residues
MKSFSIIATAAMGLESVVAEEVRRLGYECRVENGKVAFEGDALAICRANLWLRTADRVKLKVGEFRATTFEELFEQTKAL
PWADYLPKDAEFPVIGKSVKSTLFSISDCQAIVKKAVVESLKERYHLSWFPETGPLCRIEVALHKDIATLTIDTSGVGLH
KRGYRARQGEAPLRETLAAALVLLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEQWPWIGERAWNEARQ
EVEDMARYDEPLDICGIDLDPHMVEMAKANAAEAGLADLISFQTGRAEQFRTDKSYGVIVSNPPYGERLGERREVEALYR
AIGRTFSALDTWSVYILTAHRGFETHYGRPATKRRKLFNGFIETHYYQYWGPRPPRRS

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=375, Percent_Identity=32.8, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42645; Mature: 42645

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSFSIIATAAMGLESVVAEEVRRLGYECRVENGKVAFEGDALAICRANLWLRTADRVKL
CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCEEEEEECCEEEEECCCEEE
KVGEFRATTFEELFEQTKALPWADYLPKDAEFPVIGKSVKSTLFSISDCQAIVKKAVVES
EECCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKERYHLSWFPETGPLCRIEVALHKDIATLTIDTSGVGLHKRGYRARQGEAPLRETLAAA
HHHHCCEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
LVLLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEQWPWIGERAWNEARQ
HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHH
EVEDMARYDEPLDICGIDLDPHMVEMAKANAAEAGLADLISFQTGRAEQFRTDKSYGVIV
HHHHHHHCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCCCEEEE
SNPPYGERLGERREVEALYRAIGRTFSALDTWSVYILTAHRGFETHYGRPATKRRKLFNG
CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHCCCCCHHHHHHHHHH
FIETHYYQYWGPRPPRRS
HHHHHHEEECCCCCCCCC
>Mature Secondary Structure
MKSFSIIATAAMGLESVVAEEVRRLGYECRVENGKVAFEGDALAICRANLWLRTADRVKL
CCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCCEEEEEECCEEEEECCCEEE
KVGEFRATTFEELFEQTKALPWADYLPKDAEFPVIGKSVKSTLFSISDCQAIVKKAVVES
EECCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKERYHLSWFPETGPLCRIEVALHKDIATLTIDTSGVGLHKRGYRARQGEAPLRETLAAA
HHHHCCEEECCCCCCEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
LVLLTNWTPDRPFVDPFCGSGTIAIEAALIGQNIAPGFNRDFVSEQWPWIGERAWNEARQ
HHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHH
EVEDMARYDEPLDICGIDLDPHMVEMAKANAAEAGLADLISFQTGRAEQFRTDKSYGVIV
HHHHHHHCCCCCCEEECCCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHCCCCCCEEEE
SNPPYGERLGERREVEALYRAIGRTFSALDTWSVYILTAHRGFETHYGRPATKRRKLFNG
CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHCCCCCHHHHHHHHHH
FIETHYYQYWGPRPPRRS
HHHHHHEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]