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The map label for this gene is dnaQ [H]

Identifier: 138894977

GI number: 138894977

Start: 1402861

End: 1403589

Strand: Direct

Name: dnaQ [H]

Synonym: GTNG_1315

Alternate gene names: 138894977

Gene position: 1402861-1403589 (Clockwise)

Preceding gene: 138894976

Following gene: 138894980

Centisome position: 39.51

GC content: 53.36

Gene sequence:

>729_bases
ATGAATGACCGGCACCGTTTTTGGCAGCGGGCGCTTCGCTTATTGGCCCTGGGCGTTCCGCGCGGAGCATCGCCCGCCTT
ATTGGGCAACGATCAGTCACTGCAGCACGAAAGCTGGCTTCGCTCGCTGCAAAAAGAGAAAGACCGTTTCATTGATTGGC
ATGACCGTTTGACCGATATTCCGTTCGTCATCATCGATATGGAAACGACCGGTTTTTCGCCGCAGCAAGGTGACGAAATT
TTAGCCATGGCAGCGGCGAAAACGGTCAATGGTCTCGTCACCGGCACATATATGACGCTCGTCAAACCGGAAAAACCGAT
TCCGGAACATATTTCTGATTTGACCGGCATTGAAGCGAAAGACGTTGTGTTCGCCCCACCGCTTGCTGAGGCGTTGCGCA
CGTTTGTTCCATTTATTTCCGCAGGTGTCTTGGTCGGCTACCATATTGGCCATGATTTATCATTTTTGCGCCATGTGCTT
TGGCGTCATTATCGGCAAAAATGGAGCTGGCGCTTTGTCGATATGCAACCAATAGTCAGCCTTGTCCGCCATCCGTGCCC
GACGCTTGACGATGCCCTCGCTTGCTATGGCATTGACTGTCCGCGGCGCCATACAGCGGACGGAGATGTGGAAGCGATGG
TGAAGCTCTGGGCGATTTTGCTCGGTGAACTGCGTGAGCTCGGCATTGAAACATTGCATGATTTGTATGCCGCCCTCAGC
CGCCATTGA

Upstream 100 bases:

>100_bases
TGGCAGACGCTCAACCGGGCGGAGCAAAAGCAGCTGAAGCAGGCGATGCGCACCGCGAAGCGGTTGCAGCGCTTCGTTGC
TCGCCGGGTGGTCGGGATGT

Downstream 100 bases:

>100_bases
TCTTCCTCGCAGCATTGGAGGAGCCGACTCTATCAGAATGAAGAAGAGTCCGGTCTTAATAGAAAAAGCGCCGAAGTCGG
CGCTTTTTTGTCGATATTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MNDRHRFWQRALRLLALGVPRGASPALLGNDQSLQHESWLRSLQKEKDRFIDWHDRLTDIPFVIIDMETTGFSPQQGDEI
LAMAAAKTVNGLVTGTYMTLVKPEKPIPEHISDLTGIEAKDVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVL
WRHYRQKWSWRFVDMQPIVSLVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGELRELGIETLHDLYAALS
RH

Sequences:

>Translated_242_residues
MNDRHRFWQRALRLLALGVPRGASPALLGNDQSLQHESWLRSLQKEKDRFIDWHDRLTDIPFVIIDMETTGFSPQQGDEI
LAMAAAKTVNGLVTGTYMTLVKPEKPIPEHISDLTGIEAKDVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVL
WRHYRQKWSWRFVDMQPIVSLVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGELRELGIETLHDLYAALS
RH
>Mature_242_residues
MNDRHRFWQRALRLLALGVPRGASPALLGNDQSLQHESWLRSLQKEKDRFIDWHDRLTDIPFVIIDMETTGFSPQQGDEI
LAMAAAKTVNGLVTGTYMTLVKPEKPIPEHISDLTGIEAKDVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVL
WRHYRQKWSWRFVDMQPIVSLVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGELRELGIETLHDLYAALS
RH

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR000014
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 27516; Mature: 27516

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRHRFWQRALRLLALGVPRGASPALLGNDQSLQHESWLRSLQKEKDRFIDWHDRLTDI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
PFVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTGTYMTLVKPEKPIPEHISDLTGIEAK
CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCC
DVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVLWRHYRQKWSWRFVDMQPIVS
CEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEECHHHHHH
LVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGELRELGIETLHDLYAALS
HHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RH
CC
>Mature Secondary Structure
MNDRHRFWQRALRLLALGVPRGASPALLGNDQSLQHESWLRSLQKEKDRFIDWHDRLTDI
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCC
PFVIIDMETTGFSPQQGDEILAMAAAKTVNGLVTGTYMTLVKPEKPIPEHISDLTGIEAK
CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHCCCCCC
DVVFAPPLAEALRTFVPFISAGVLVGYHIGHDLSFLRHVLWRHYRQKWSWRFVDMQPIVS
CEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCEEEECHHHHHH
LVRHPCPTLDDALACYGIDCPRRHTADGDVEAMVKLWAILLGELRELGIETLHDLYAALS
HHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RH
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9256491 [H]