Click here to switch to the map view.

The map label for this gene is ybbD [H]

Identifier: 138894951

GI number: 138894951

Start: 1369758

End: 1371851

Strand: Direct

Name: ybbD [H]

Synonym: GTNG_1289

Alternate gene names: 138894951

Gene position: 1369758-1371851 (Clockwise)

Preceding gene: 138894950

Following gene: 138894952

Centisome position: 38.58

GC content: 47.09

Gene sequence:

>2094_bases
ATGTCATTTTATTGGAAAACAGCTGTTTTCATGACTGTGATCACCTTTTTCATTTCGTGGGCCTCGCCACAGGTTGGAGC
CAAAGAGAAAGTGGGAGTCGATTTGATTATCTACCAGAATATCCCTGAGGTTGACGTAACCATCGACGGGAATACTGTCG
CATTGCGGGCATTGAAAGTTTATCCAAAAGGAAATTTTTCTGAAGTGACAACAGGGGTTCAATGGAAATCATCCAATCGA
CAAGTCGCTTCTGTCAGCCGCAACGGTACCGTAGTTTTCAGCGGGAAAAGTGGAAAAACGTTCATCACCGTTACCGATGG
CGTTCGCAAAGATCGAATCGGATTTACTGTAAAACCCGTTTCTGCAGCAAAAAAAGGGGGAAAATCAGACATCAAAGTGT
CTGTTTCTAAGGAAAAAGGAAGCCGTTATGACGTGATTTCGCGAGCGGTTAAAGGGTTGACACTAGAAGAAAAAATCGGC
CAGATGCTAATGCCGGATTTCCGATATTTTAACGGAGCACCTGTCACGGCGATGCGTCCGGAAATCAAAGAGCTCATACA
AAAATATCATATTGGCGGCATTATTTTATTCCGAGAAAACGTTGTAACGACCGAGCAGACAGCACGGCTTGTGATGGATT
ATCAACAAGCAGCGGAAAAGTTCGGTTTGCTGATCTCCATCGATCAGGAAGGCGGCATTGTGACGAGGTTGCAGTCAGGG
ACGAATATGCCAGGGAATATGACGCTCGGAGCTACGCGTTCGGAGTCACTCGCTTACAAAGTAGGACATGCGATTGGCGA
AGAGTTATACGCGTTAGGCATAAATATGAATTTAGCACCTGTTTTGGACGTAAACAACAATCCGGATAATCCGGTTATCG
GGGTTCGTTCATTCGGTGAAAATCCAGAATTGGTCGCCCAACTAGGGACAGCATATATGAAAGGGCTGCAAGATATCGGC
GTTGCCGCTACCGCCAAGCATTTTCCTGGTCATGGGGATACTGCGGTCGACTCTCATCTCGGACTTCCCGAGGTGCCACA
CGACCGAAGCCGTCTTGAAACGGTGGAATGGTATCCGTTTCAAAAGGCAATGGAAGCTGGGATTGACGCGGTGATGACCG
CCCATGTCACATTCCCGAAAATCGATGATACGAAAGTCATTTCCCAAAAAGACGGGACAGAAATTTCGCTTCCTGCCACA
TTGTCACATAAAGTGCTTACGGAATTAATGCGTCAAGAAATGGGATTTCAAGGCGTGATTATTACGGATGCTATGAACAT
GAAAGCCATCAGCGATCATTTCGGACCGGTCGATGCAGCAGTTAGAGCGGTGCAAGCGGGTGCGGATATTGTGTTGATGC
CGATCGGATTGGAAGAAGTTGCTACCGGTTTGAAGAAGGCGGTGGAAAACGGTGAGATCTCACAAGAGAGGATCGATCAA
TCCGTGAAACGGATTTTGACGTTGAAAGTGAAACGGGGCATTTTTAAGCAAGAGACGCCGCCGAATGAACAGGAAGTGAT
CGATCGCGCGTTGCGTGTTGTCGGTTCAGAGGAGCATAAACAAATCGAGCGCGAAGCGGCAGCCAAATCGATCACATTGG
TGAAAAATGAACAAGTATTGCCGCTATCGCCAAGCAAAATCGATCATCTCGTCGTTGTCGGCAATACGATGATTGAAACA
TTGGCTGAAGCGGTGCGGGCATATGTGTCCAATGTGACTGTGATTCAAGGTGCAGCTCCGTTAAACGAGGAGCAGTTACA
AAGCGTAAAAAAAGCCGATGCCGTTATTGTCGGCACTTATACGTCAAACGCCTCAGAGCGGCTGCCGTCCAATCCACAAA
TGAAAATGGTGCGACAAATGATTGATAATACGGATGCTCCTGTTATTGCTATCGGGATTCGCAACCCGTATGATATGATG
TCCTACCCGGACGTTGAGGCATATTTGGCCCAGTATAGTTTTCAACCGGCAAGTTTTCAGGCGGTGGTAGATGTGATTTT
TGGAATCAACATGCCAACCGGCCGGCTTCCGGTAACGATTCCACGTTATGATGGCGGTATATTGTACGAATATGGTCATG
GCCTTAGTTACTAA

Upstream 100 bases:

>100_bases
CGCCTTGTCGACGATGATGGGAAAGAGTTAGAGACATTATGGGAAAGCCATGATTGGGAACGGCGCACGTTTTAAACAAA
CCATATAAGGGGGAACGGGG

Downstream 100 bases:

>100_bases
AACGGGAGGAACGTTATGAAAAAGAAATGGTGGATGATGTTTTCTTTGATCTTGTTAAGTTTATTTATGTTTACCGATGC
CTTGGCCAAAGCCCCGAAGA

Product: beta-hexosamidase A

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MSFYWKTAVFMTVITFFISWASPQVGAKEKVGVDLIIYQNIPEVDVTIDGNTVALRALKVYPKGNFSEVTTGVQWKSSNR
QVASVSRNGTVVFSGKSGKTFITVTDGVRKDRIGFTVKPVSAAKKGGKSDIKVSVSKEKGSRYDVISRAVKGLTLEEKIG
QMLMPDFRYFNGAPVTAMRPEIKELIQKYHIGGIILFRENVVTTEQTARLVMDYQQAAEKFGLLISIDQEGGIVTRLQSG
TNMPGNMTLGATRSESLAYKVGHAIGEELYALGINMNLAPVLDVNNNPDNPVIGVRSFGENPELVAQLGTAYMKGLQDIG
VAATAKHFPGHGDTAVDSHLGLPEVPHDRSRLETVEWYPFQKAMEAGIDAVMTAHVTFPKIDDTKVISQKDGTEISLPAT
LSHKVLTELMRQEMGFQGVIITDAMNMKAISDHFGPVDAAVRAVQAGADIVLMPIGLEEVATGLKKAVENGEISQERIDQ
SVKRILTLKVKRGIFKQETPPNEQEVIDRALRVVGSEEHKQIEREAAAKSITLVKNEQVLPLSPSKIDHLVVVGNTMIET
LAEAVRAYVSNVTVIQGAAPLNEEQLQSVKKADAVIVGTYTSNASERLPSNPQMKMVRQMIDNTDAPVIAIGIRNPYDMM
SYPDVEAYLAQYSFQPASFQAVVDVIFGINMPTGRLPVTIPRYDGGILYEYGHGLSY

Sequences:

>Translated_697_residues
MSFYWKTAVFMTVITFFISWASPQVGAKEKVGVDLIIYQNIPEVDVTIDGNTVALRALKVYPKGNFSEVTTGVQWKSSNR
QVASVSRNGTVVFSGKSGKTFITVTDGVRKDRIGFTVKPVSAAKKGGKSDIKVSVSKEKGSRYDVISRAVKGLTLEEKIG
QMLMPDFRYFNGAPVTAMRPEIKELIQKYHIGGIILFRENVVTTEQTARLVMDYQQAAEKFGLLISIDQEGGIVTRLQSG
TNMPGNMTLGATRSESLAYKVGHAIGEELYALGINMNLAPVLDVNNNPDNPVIGVRSFGENPELVAQLGTAYMKGLQDIG
VAATAKHFPGHGDTAVDSHLGLPEVPHDRSRLETVEWYPFQKAMEAGIDAVMTAHVTFPKIDDTKVISQKDGTEISLPAT
LSHKVLTELMRQEMGFQGVIITDAMNMKAISDHFGPVDAAVRAVQAGADIVLMPIGLEEVATGLKKAVENGEISQERIDQ
SVKRILTLKVKRGIFKQETPPNEQEVIDRALRVVGSEEHKQIEREAAAKSITLVKNEQVLPLSPSKIDHLVVVGNTMIET
LAEAVRAYVSNVTVIQGAAPLNEEQLQSVKKADAVIVGTYTSNASERLPSNPQMKMVRQMIDNTDAPVIAIGIRNPYDMM
SYPDVEAYLAQYSFQPASFQAVVDVIFGINMPTGRLPVTIPRYDGGILYEYGHGLSY
>Mature_696_residues
SFYWKTAVFMTVITFFISWASPQVGAKEKVGVDLIIYQNIPEVDVTIDGNTVALRALKVYPKGNFSEVTTGVQWKSSNRQ
VASVSRNGTVVFSGKSGKTFITVTDGVRKDRIGFTVKPVSAAKKGGKSDIKVSVSKEKGSRYDVISRAVKGLTLEEKIGQ
MLMPDFRYFNGAPVTAMRPEIKELIQKYHIGGIILFRENVVTTEQTARLVMDYQQAAEKFGLLISIDQEGGIVTRLQSGT
NMPGNMTLGATRSESLAYKVGHAIGEELYALGINMNLAPVLDVNNNPDNPVIGVRSFGENPELVAQLGTAYMKGLQDIGV
AATAKHFPGHGDTAVDSHLGLPEVPHDRSRLETVEWYPFQKAMEAGIDAVMTAHVTFPKIDDTKVISQKDGTEISLPATL
SHKVLTELMRQEMGFQGVIITDAMNMKAISDHFGPVDAAVRAVQAGADIVLMPIGLEEVATGLKKAVENGEISQERIDQS
VKRILTLKVKRGIFKQETPPNEQEVIDRALRVVGSEEHKQIEREAAAKSITLVKNEQVLPLSPSKIDHLVVVGNTMIETL
AEAVRAYVSNVTVIQGAAPLNEEQLQSVKKADAVIVGTYTSNASERLPSNPQMKMVRQMIDNTDAPVIAIGIRNPYDMMS
YPDVEAYLAQYSFQPASFQAVVDVIFGINMPTGRLPVTIPRYDGGILYEYGHGLSY

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=279, Percent_Identity=30.1075268817204, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1788453, Length=429, Percent_Identity=25.1748251748252, Blast_Score=96, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 76176; Mature: 76045

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFYWKTAVFMTVITFFISWASPQVGAKEKVGVDLIIYQNIPEVDVTIDGNTVALRALKV
CCEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEEEE
YPKGNFSEVTTGVQWKSSNRQVASVSRNGTVVFSGKSGKTFITVTDGVRKDRIGFTVKPV
CCCCCHHHHCCCEEECCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECH
SAAKKGGKSDIKVSVSKEKGSRYDVISRAVKGLTLEEKIGQMLMPDFRYFNGAPVTAMRP
HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCCCCCCH
EIKELIQKYHIGGIILFRENVVTTEQTARLVMDYQQAAEKFGLLISIDQEGGIVTRLQSG
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCC
TNMPGNMTLGATRSESLAYKVGHAIGEELYALGINMNLAPVLDVNNNPDNPVIGVRSFGE
CCCCCCEEECCCCCCHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCEEEECCCCC
NPELVAQLGTAYMKGLQDIGVAATAKHFPGHGDTAVDSHLGLPEVPHDRSRLETVEWYPF
CHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCCCCCHHHCCEEEECCH
QKAMEAGIDAVMTAHVTFPKIDDTKVISQKDGTEISLPATLSHKVLTELMRQEMGFQGVI
HHHHHCCCCEEEEEEEECCCCCCCEEECCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEE
ITDAMNMKAISDHFGPVDAAVRAVQAGADIVLMPIGLEEVATGLKKAVENGEISQERIDQ
EECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHH
SVKRILTLKVKRGIFKQETPPNEQEVIDRALRVVGSEEHKQIEREAAAKSITLVKNEQVL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCEEE
PLSPSKIDHLVVVGNTMIETLAEAVRAYVSNVTVIQGAAPLNEEQLQSVKKADAVIVGTY
CCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCEEEEEEE
TSNASERLPSNPQMKMVRQMIDNTDAPVIAIGIRNPYDMMSYPDVEAYLAQYSFQPASFQ
CCCHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHCCCCCCHHHHHHHHCCCCCHHH
AVVDVIFGINMPTGRLPVTIPRYDGGILYEYGHGLSY
HHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCC
>Mature Secondary Structure 
SFYWKTAVFMTVITFFISWASPQVGAKEKVGVDLIIYQNIPEVDVTIDGNTVALRALKV
CEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCEEEEEEEEE
YPKGNFSEVTTGVQWKSSNRQVASVSRNGTVVFSGKSGKTFITVTDGVRKDRIGFTVKPV
CCCCCHHHHCCCEEECCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECH
SAAKKGGKSDIKVSVSKEKGSRYDVISRAVKGLTLEEKIGQMLMPDFRYFNGAPVTAMRP
HHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCCCCCCH
EIKELIQKYHIGGIILFRENVVTTEQTARLVMDYQQAAEKFGLLISIDQEGGIVTRLQSG
HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEECCC
TNMPGNMTLGATRSESLAYKVGHAIGEELYALGINMNLAPVLDVNNNPDNPVIGVRSFGE
CCCCCCEEECCCCCCHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCEEEECCCCC
NPELVAQLGTAYMKGLQDIGVAATAKHFPGHGDTAVDSHLGLPEVPHDRSRLETVEWYPF
CHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCHHCCCCCCCCCCCHHHCCEEEECCH
QKAMEAGIDAVMTAHVTFPKIDDTKVISQKDGTEISLPATLSHKVLTELMRQEMGFQGVI
HHHHHCCCCEEEEEEEECCCCCCCEEECCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEE
ITDAMNMKAISDHFGPVDAAVRAVQAGADIVLMPIGLEEVATGLKKAVENGEISQERIDQ
EECCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCHHHHHH
SVKRILTLKVKRGIFKQETPPNEQEVIDRALRVVGSEEHKQIEREAAAKSITLVKNEQVL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCEEE
PLSPSKIDHLVVVGNTMIETLAEAVRAYVSNVTVIQGAAPLNEEQLQSVKKADAVIVGTY
CCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCEEEEEEE
TSNASERLPSNPQMKMVRQMIDNTDAPVIAIGIRNPYDMMSYPDVEAYLAQYSFQPASFQ
CCCHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHCCCCCCHHHHHHHHCCCCCHHH
AVVDVIFGINMPTGRLPVTIPRYDGGILYEYGHGLSY
HHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]