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The map label for this gene is 138894925

Identifier: 138894925

GI number: 138894925

Start: 1334242

End: 1334763

Strand: Reverse

Name: 138894925

Synonym: GTNG_1263

Alternate gene names: NA

Gene position: 1334763-1334242 (Counterclockwise)

Preceding gene: 138894930

Following gene: 138894924

Centisome position: 37.6

GC content: 46.36

Gene sequence:

>522_bases
ATGGTTCATATAAATGAAGACAGCTACGTCAATTGGATTGAACAGCTATGCCTTTCGACTTGGGAATCGGTTTACCGATT
GATCTATTTTAAGGTCCAAAACCGCGAAGAAGCCGAAGATATCACACAGGAAACGTATGTCAGAGCCATCCCATATTTAC
AAAAAAACCGCGTCCCGCCTGATAAACAGATGGCCTTTCTAAAAACAGTGGCCTTGAATATCATCCGGGATCGCTGGCGG
CAGCACCAACGCCGAGGAACGACAGCCGATTTGGAAGCCATCGCTCCAAAAGAAGTGGCCTCCGAGGATCCTGCCGAATG
GAGTGTACAGCGCATAGCGATCGAAAAAGCATTAAATCAACTCAGCAAAGAGCAACGCACCGTGATCGAACTGAGAATCA
TAAAAGGATATTCTGTCGCTGAAACCGCCCGAATCATGAATAAAAAAGAAACAACCATTCGCGTGATGCAACATCGGGCA
TTGCAAGCGCTTAACCGCATTTTACATGACGAGACGAAGTGA

Upstream 100 bases:

>100_bases
GCCCATAGATTCAAAAACATTGAATGCCGGTAACGTTTTGAACAACTTTATCGTTTTTATTAGTGTAAATATTCCGGCCG
GAAAAAAGGAGTTACGATGT

Downstream 100 bases:

>100_bases
AGGAGGAGTCTATCGATGCACGACAACGAACGCCGCTTATCCGATTATATTGACCAGTTGAACGCCGAGAAAAAACCAAA
AGAGCATGAACATTCAGCGG

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor SigX; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-W Factor

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVHINEDSYVNWIEQLCLSTWESVYRLIYFKVQNREEAEDITQETYVRAIPYLQKNRVPPDKQMAFLKTVALNIIRDRWR
QHQRRGTTADLEAIAPKEVASEDPAEWSVQRIAIEKALNQLSKEQRTVIELRIIKGYSVAETARIMNKKETTIRVMQHRA
LQALNRILHDETK

Sequences:

>Translated_173_residues
MVHINEDSYVNWIEQLCLSTWESVYRLIYFKVQNREEAEDITQETYVRAIPYLQKNRVPPDKQMAFLKTVALNIIRDRWR
QHQRRGTTADLEAIAPKEVASEDPAEWSVQRIAIEKALNQLSKEQRTVIELRIIKGYSVAETARIMNKKETTIRVMQHRA
LQALNRILHDETK
>Mature_173_residues
MVHINEDSYVNWIEQLCLSTWESVYRLIYFKVQNREEAEDITQETYVRAIPYLQKNRVPPDKQMAFLKTVALNIIRDRWR
QHQRRGTTADLEAIAPKEVASEDPAEWSVQRIAIEKALNQLSKEQRTVIELRIIKGYSVAETARIMNKKETTIRVMQHRA
LQALNRILHDETK

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20432; Mature: 20432

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHINEDSYVNWIEQLCLSTWESVYRLIYFKVQNREEAEDITQETYVRAIPYLQKNRVPP
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
DKQMAFLKTVALNIIRDRWRQHQRRGTTADLEAIAPKEVASEDPAEWSVQRIAIEKALNQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHH
LSKEQRTVIELRIIKGYSVAETARIMNKKETTIRVMQHRALQALNRILHDETK
HHHHHHHHHHHHEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVHINEDSYVNWIEQLCLSTWESVYRLIYFKVQNREEAEDITQETYVRAIPYLQKNRVPP
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
DKQMAFLKTVALNIIRDRWRQHQRRGTTADLEAIAPKEVASEDPAEWSVQRIAIEKALNQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHH
LSKEQRTVIELRIIKGYSVAETARIMNKKETTIRVMQHRALQALNRILHDETK
HHHHHHHHHHHHEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA