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The map label for this gene is rnjB [H]

Identifier: 138894798

GI number: 138894798

Start: 1194958

End: 1196628

Strand: Direct

Name: rnjB [H]

Synonym: GTNG_1132

Alternate gene names: 138894798

Gene position: 1194958-1196628 (Clockwise)

Preceding gene: 138894797

Following gene: 138894799

Centisome position: 33.66

GC content: 51.11

Gene sequence:

>1671_bases
TTGAAATCAAAAATAAAGCCGGTAGAGAAAATACGTATTTTTGCCCTTGGGGGAGTCGGAGAAATCGGCAAAAACATGTA
TGTCGTTGAATTAGACGAGGACATTTTCGTCCTTGATGCCGGGGTCATGTATCCGGAAGATGAAATGCTTGGCATCGACA
AGGTGATTCCGGACATTACGTATTTAATTGAACGGCAACATCGCATTCAGGCGATTTTTCTCACCCATGGGCATGAGGAA
CATATGGGAGCGATCGCCTATGTGCTCAAGCAGCTGTCTGCGCCAGTATACGGTACGAAGTTGACGCTCGGTTTGGCAGA
AGCGATTTTAAAAGAACAAGGCATCACGAACGCCAATCTGAACGAAATTCACCCCGATGCCGAATTATTGTTTGACAAGG
CGAAAGTGACGTTTTTCCGCACGATCCACAGCATCCCCGATTCCGTCGGCATAAGCCTGCATACATCGCAAGGGGCGATT
GTGTACACGAGTGATTTTAAATTTGACCAAACACCGTACGGAAACAGCCGCGCTGACTTGGGGAAAATGGCACAGATCGG
CGAACAAGGGGTGCTATGCTTGCTTTCGGACAGCACGAATGCTGAGCGCCCTGGATACAGTGGTTCTGACGCGGTGGTCG
CCCATGAAATTGCCGATGTGATCGGCCATGCGAAGGGACGTGTGTTCGTCGCCTGCTACGCCTCGAACATTATGCGCATC
CAGCAAGTGCTTTATGCCGCCCACCAATACGGGCGCAAAGTGGCGGTGATCGGCAAAACGCTGCATAAAGTGATGGATAT
CGCGGTGCGCCTTGGTTATTTGCACCTTCCGGACAAGGTGACGATCTCCGCTCATGACCTCGACCGTTATCGCGATCAAG
AACTCATCATTTTAACGACCGGCGGGCACGGCGAGCCGATAAGTGCGCTTTGGCGCATGGCACGACAGACCAATAAACAG
GTGAACATCAAGGAAGGAGACACCGTCATCGTTGCTGCTTCTGTCATGCCGGGCTATGAACTTGGGTTCGCCAAAACGAT
CGACGCTTTGTACCGCGCCGGGGCGAATGTGATTTACCGCGATCGGCAAGTGCACGTGTCCGGACACGGTTGCCAGGAAG
AATTAAAGTTAATGCTCAATTTAATGAAGCCGAAATATTTCATTCCGGTGCACGGGGAGTATCGAATGCAAAAGGCGCAC
GCACGCTTGGCGAAAGCAGTCGGCATCTCGGAAGAGCGGACGTTTTTGCTCGATAAAGGCGAAGTGATCGAATTCCGAAG
CGGAACTGCCCGCCCTGGCGGCAAAGTGCCGTACGGCAACATTTTAATTGACGGTCTTGGCATCGGCGATGTCGGCAACA
TCGTGTTGCGCGACCGGCGCCTATTGTCACAGGACGGCATTTTAATCGCGGTCGTCACGCTCAACAAAGAAGCGAAAACG
ATTGCGGCCGGTCCGGAGATCATTTCACGCGGCTTCGTTTACATGCGCGAGGCCGAAACGCTGCTTGAGGAAGCGGAACA
AATGGTAGCGGCGATCATTGAACGTTGCCTTGAGTCGTACATGCTTGAATGGTCGTCATTAAAGGCGAACATTCGCGAGG
CGTTAAGCCAGTTTTTATTTGAAAAAACGAAGCGAAAACCGATGATTTTACCTATTATTATGGAAGTATAA

Upstream 100 bases:

>100_bases
CTGCCCGATTATAACAATCTTGTGTTTTTCAGCGCCGATTCGTTATAATAAAGGCAAGTGACTTTGAGCGGGTTAGCATC
ATGATTGGGAGGACGCAGCC

Downstream 100 bases:

>100_bases
TGCAATCATGCTCAAAGTCCACGGGGGAAATGCTGGAAACGGTTGGCCGTTGCCGGCATTTTTCTTTTCCTTTCGGCCAT
ACTAAACGTATGACCAACAG

Product: Zn-dependent hydrolase

Products: NA

Alternate protein names: RNase J2 [H]

Number of amino acids: Translated: 556; Mature: 556

Protein sequence:

>556_residues
MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMYPEDEMLGIDKVIPDITYLIERQHRIQAIFLTHGHEE
HMGAIAYVLKQLSAPVYGTKLTLGLAEAILKEQGITNANLNEIHPDAELLFDKAKVTFFRTIHSIPDSVGISLHTSQGAI
VYTSDFKFDQTPYGNSRADLGKMAQIGEQGVLCLLSDSTNAERPGYSGSDAVVAHEIADVIGHAKGRVFVACYASNIMRI
QQVLYAAHQYGRKVAVIGKTLHKVMDIAVRLGYLHLPDKVTISAHDLDRYRDQELIILTTGGHGEPISALWRMARQTNKQ
VNIKEGDTVIVAASVMPGYELGFAKTIDALYRAGANVIYRDRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAH
ARLAKAVGISEERTFLLDKGEVIEFRSGTARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
IAAGPEIISRGFVYMREAETLLEEAEQMVAAIIERCLESYMLEWSSLKANIREALSQFLFEKTKRKPMILPIIMEV

Sequences:

>Translated_556_residues
MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMYPEDEMLGIDKVIPDITYLIERQHRIQAIFLTHGHEE
HMGAIAYVLKQLSAPVYGTKLTLGLAEAILKEQGITNANLNEIHPDAELLFDKAKVTFFRTIHSIPDSVGISLHTSQGAI
VYTSDFKFDQTPYGNSRADLGKMAQIGEQGVLCLLSDSTNAERPGYSGSDAVVAHEIADVIGHAKGRVFVACYASNIMRI
QQVLYAAHQYGRKVAVIGKTLHKVMDIAVRLGYLHLPDKVTISAHDLDRYRDQELIILTTGGHGEPISALWRMARQTNKQ
VNIKEGDTVIVAASVMPGYELGFAKTIDALYRAGANVIYRDRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAH
ARLAKAVGISEERTFLLDKGEVIEFRSGTARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
IAAGPEIISRGFVYMREAETLLEEAEQMVAAIIERCLESYMLEWSSLKANIREALSQFLFEKTKRKPMILPIIMEV
>Mature_556_residues
MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMYPEDEMLGIDKVIPDITYLIERQHRIQAIFLTHGHEE
HMGAIAYVLKQLSAPVYGTKLTLGLAEAILKEQGITNANLNEIHPDAELLFDKAKVTFFRTIHSIPDSVGISLHTSQGAI
VYTSDFKFDQTPYGNSRADLGKMAQIGEQGVLCLLSDSTNAERPGYSGSDAVVAHEIADVIGHAKGRVFVACYASNIMRI
QQVLYAAHQYGRKVAVIGKTLHKVMDIAVRLGYLHLPDKVTISAHDLDRYRDQELIILTTGGHGEPISALWRMARQTNKQ
VNIKEGDTVIVAASVMPGYELGFAKTIDALYRAGANVIYRDRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAH
ARLAKAVGISEERTFLLDKGEVIEFRSGTARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
IAAGPEIISRGFVYMREAETLLEEAEQMVAAIIERCLESYMLEWSSLKANIREALSQFLFEKTKRKPMILPIIMEV

Specific function: Cleaves the 5'-leader sequence of certain mRNAs. May play a role in maturation and stability of specific mRNAs. Appears to have a limited effect on 16S rRNA maturation, despite its similarity to rnjA [H]

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 61682; Mature: 61682

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMYPEDEMLGIDKVIPDIT
CCCCCCCHHEEEEEEECCCHHHCCCEEEEEECCCEEEEECCCCCCCHHHCCHHHHHHHHH
YLIERQHRIQAIFLTHGHEEHMGAIAYVLKQLSAPVYGTKLTLGLAEAILKEQGITNANL
HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCC
NEIHPDAELLFDKAKVTFFRTIHSIPDSVGISLHTSQGAIVYTSDFKFDQTPYGNSRADL
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHH
GKMAQIGEQGVLCLLSDSTNAERPGYSGSDAVVAHEIADVIGHAKGRVFVACYASNIMRI
HHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
QQVLYAAHQYGRKVAVIGKTLHKVMDIAVRLGYLHLPDKVTISAHDLDRYRDQELIILTT
HHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCEEECCCEEEEEHHHHHHHCCCEEEEEEE
GGHGEPISALWRMARQTNKQVNIKEGDTVIVAASVMPGYELGFAKTIDALYRAGANVIYR
CCCCCHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE
DRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHARLAKAVGISEERTFLLDKG
CCEEEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
EVIEFRSGTARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
CEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCE
IAAGPEIISRGFVYMREAETLLEEAEQMVAAIIERCLESYMLEWSSLKANIREALSQFLF
EECCHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKTKRKPMILPIIMEV
HHHCCCCEEEEEEECC
>Mature Secondary Structure
MKSKIKPVEKIRIFALGGVGEIGKNMYVVELDEDIFVLDAGVMYPEDEMLGIDKVIPDIT
CCCCCCCHHEEEEEEECCCHHHCCCEEEEEECCCEEEEECCCCCCCHHHCCHHHHHHHHH
YLIERQHRIQAIFLTHGHEEHMGAIAYVLKQLSAPVYGTKLTLGLAEAILKEQGITNANL
HHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCC
NEIHPDAELLFDKAKVTFFRTIHSIPDSVGISLHTSQGAIVYTSDFKFDQTPYGNSRADL
HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCHHHH
GKMAQIGEQGVLCLLSDSTNAERPGYSGSDAVVAHEIADVIGHAKGRVFVACYASNIMRI
HHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
QQVLYAAHQYGRKVAVIGKTLHKVMDIAVRLGYLHLPDKVTISAHDLDRYRDQELIILTT
HHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCEEECCCEEEEEHHHHHHHCCCEEEEEEE
GGHGEPISALWRMARQTNKQVNIKEGDTVIVAASVMPGYELGFAKTIDALYRAGANVIYR
CCCCCHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE
DRQVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHARLAKAVGISEERTFLLDKG
CCEEEECCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCC
EVIEFRSGTARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIAVVTLNKEAKT
CEEEECCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCE
IAAGPEIISRGFVYMREAETLLEEAEQMVAAIIERCLESYMLEWSSLKANIREALSQFLF
EECCHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKTKRKPMILPIIMEV
HHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]