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The map label for this gene is ylmH [H]

Identifier: 138894669

GI number: 138894669

Start: 1063534

End: 1064307

Strand: Direct

Name: ylmH [H]

Synonym: GTNG_0999

Alternate gene names: 138894669

Gene position: 1063534-1064307 (Clockwise)

Preceding gene: 138894668

Following gene: 138894670

Centisome position: 29.96

GC content: 54.65

Gene sequence:

>774_bases
ATGGAACTGTATCAGCACTTTCGTAAAGAGGAACACCCATTCATTGATCAAGTGCTCGAGTGGAAGGACACGGTGAGCCG
CCAATACGCACCTAAGCTGACGGATTTTCTTGACCCGCGTGAGCAGCAAATCGTCCAAAGCATTGTCGGCAGCGATGAAG
ACGTGCGTGTGTCCTTTTTTGGCGGCGTCCCGTTCGCCGAGCGGAAGCGGGCGTTTCTTTATCCGCCGTATATCGAGCCG
GATGAAGGCGACTATGACATCGTCTTGTTTGCTGTCCGCTATCCGGATAAATTCATTTCCCTTGAACACCGCGACGTCTT
AGGTGCACTCATGTCGCTCGGTTTGCGGCGCGGCAAGTTCGGTGATATTCTCGTCCAAGGAGGAGAGATCCAATTTTTCG
CCGCCGCGGAGGTGGCCGATTACATTCGTCTTCATGTCGAGACGATCGGCAAAGCTCGAGTTACACTTGAGCCGTTGCCG
CTGTCGGCTGCCATGCCGATTGAAGAAACATGGCAAGAAGGGACGGTGACCGTCTCTTCGCTGCGGCTTGATGCTGTGCT
TGCCCAAGCATTCCGTCTCGCGCGTGATAAGGCGCGAACGCTTGTTGAAAGCGGGCTTGTCAAAGTGAACTGGAGAGTGG
TGGACAAGCCGGATTTCGTCTGCGGACCGGGTGATGTGTTGTCAGCGCGTGGTTTTGGTCGCTGCAAGCTGTTTTCTGTG
GAAGGGCCGACGAAAAAAGAGCGCTGGCTCGTGCGTATCGGCCGACAAAAATAA

Upstream 100 bases:

>100_bases
CGGCATTTGCTGCAGCCTGATGATGAAGGTCAATGGGCAGCGCTCATGGAGAGGAATCCATTGCGGGTTCCTTTCTTTAA
TGAATACGGAGTGAACGGGA

Downstream 100 bases:

>100_bases
TCAAACAGCAGCAGGAAATGGGCAAATCGTGTCGAATTAAGCAAGAAAAGGAAAGATGGAGACGGAGGTGGCCATTGTGC
CGTTAACGCCATTAGATATT

Product: RNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MELYQHFRKEEHPFIDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLYPPYIEP
DEGDYDIVLFAVRYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQGGEIQFFAAAEVADYIRLHVETIGKARVTLEPLP
LSAAMPIEETWQEGTVTVSSLRLDAVLAQAFRLARDKARTLVESGLVKVNWRVVDKPDFVCGPGDVLSARGFGRCKLFSV
EGPTKKERWLVRIGRQK

Sequences:

>Translated_257_residues
MELYQHFRKEEHPFIDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLYPPYIEP
DEGDYDIVLFAVRYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQGGEIQFFAAAEVADYIRLHVETIGKARVTLEPLP
LSAAMPIEETWQEGTVTVSSLRLDAVLAQAFRLARDKARTLVESGLVKVNWRVVDKPDFVCGPGDVLSARGFGRCKLFSV
EGPTKKERWLVRIGRQK
>Mature_257_residues
MELYQHFRKEEHPFIDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFFGGVPFAERKRAFLYPPYIEP
DEGDYDIVLFAVRYPDKFISLEHRDVLGALMSLGLRRGKFGDILVQGGEIQFFAAAEVADYIRLHVETIGKARVTLEPLP
LSAAMPIEETWQEGTVTVSSLRLDAVLAQAFRLARDKARTLVESGLVKVNWRVVDKPDFVCGPGDVLSARGFGRCKLFSV
EGPTKKERWLVRIGRQK

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29259; Mature: 29259

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELYQHFRKEEHPFIDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFF
CCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCCEEEEEE
GGVPFAERKRAFLYPPYIEPDEGDYDIVLFAVRYPDKFISLEHRDVLGALMSLGLRRGKF
CCCCHHHCCCEEECCCCCCCCCCCEEEEEEEEECCCHHCCCHHHHHHHHHHHHHCCCCCC
GDILVQGGEIQFFAAAEVADYIRLHVETIGKARVTLEPLPLSAAMPIEETWQEGTVTVSS
CCEEEECCCEEEEEHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHCCCCEEEHH
LRLDAVLAQAFRLARDKARTLVESGLVKVNWRVVDKPDFVCGPGDVLSARGFGRCKLFSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEECCCCHHCCCCCCCEEEEEC
EGPTKKERWLVRIGRQK
CCCCCHHHHHEEECCCC
>Mature Secondary Structure
MELYQHFRKEEHPFIDQVLEWKDTVSRQYAPKLTDFLDPREQQIVQSIVGSDEDVRVSFF
CCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCCCEEEEEE
GGVPFAERKRAFLYPPYIEPDEGDYDIVLFAVRYPDKFISLEHRDVLGALMSLGLRRGKF
CCCCHHHCCCEEECCCCCCCCCCCEEEEEEEEECCCHHCCCHHHHHHHHHHHHHCCCCCC
GDILVQGGEIQFFAAAEVADYIRLHVETIGKARVTLEPLPLSAAMPIEETWQEGTVTVSS
CCEEEECCCEEEEEHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHCCCCEEEHH
LRLDAVLAQAFRLARDKARTLVESGLVKVNWRVVDKPDFVCGPGDVLSARGFGRCKLFSV
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEECCCCHHCCCCCCCEEEEEC
EGPTKKERWLVRIGRQK
CCCCCHHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]