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The map label for this gene is dapL

Identifier: 138894582

GI number: 138894582

Start: 986460

End: 987593

Strand: Direct

Name: dapL

Synonym: GTNG_0912

Alternate gene names: 138894582

Gene position: 986460-987593 (Clockwise)

Preceding gene: 138894581

Following gene: 138894583

Centisome position: 27.79

GC content: 50.97

Gene sequence:

>1134_bases
ATGGAAACGATCAGCCCATTTGTCGCCATTCGTCGCGACTTGCATAAAATTCCCGAGCTCGGGTTTCAGGAGTTTAAAAC
ACAGCAATATTTGCTTAATTATATTCAATCTCTGCCGCAAGAGCGGCTTGATGTCCGGACATGGAAAACAGGTATTTTTG
TGAAAGTCAGCGGAACAGCACCGCGAAAAACGATCGGCTACCGTGCTGATATCGACGGCTTGCCGATCAGCGAAGAAACT
GGTCTGCCGTACCGCTCCGAGCATGCAGGGCAAATGCATGCGTGCGGTCATGATGTCCATATGAGCATTGCCCTTGGCGT
GTTGACCCATTTTGCCCACAATCCAATCAGAGACGATTTGCTGTTTATTTTTCAGCCGGCCGAAGAAGGGCCAGGTGGGG
CGAAGCCGATGTTAGAAAGCGATATAATGCGCGAGTGGAAGCCGGATATGATTGTTGCTTTGCATATTGCCCCGGAATAT
CCAGTCGGCACAATTGCAACGAAAGAAGGCCTGTTGTTTGCCAATACGTCGGAGCTGTTTATTGACTTAAAAGGGAAAGG
CGGCCATGCGGCGTTTCCGCATCTAGCCAACGATATGGTCGTTGCCGCCTGTGCGCTCGTCACCCAGCTGCAATCGATCG
TCGCTCGCAACGTTGATCCGCTTGACAGCGCCGTCATTACGATCGGAAAGATTACCAGTGGGACAGTGCAAAACGTCATC
GCCGAACATGCTCGGCTCGAAGGGACGATCCGGACGCTGTCGATCGATGCCATGCAGGCAGTGAAGCGGCGGATTGAAGC
GCTCGTCCGTGGGGTGGAAGTGGCCTATGAATGTGAGGCGGTGATTGATTACGGTGCCATGTACCACGAAGTGTACAATA
ACCCGGCACTGACAACGGAATTTATCCAATTTGCTGAGACACATACTGATATGAATGTTATTCGCTGCAAAGAGGCGATG
ACCGGTGAGGATTTTGGCTATATGCTGGCAGAAATTCCTGGTTTTATGTTTTGGCTTGGCGTTGATTCCCCGTACGGGCT
GCACCATGCGAAGCTAGTCCCGAATGAAGCGGCAATCGATCGGGCCATCGCCTTTTTAATCAGCTATTTTTCGTGGAAAG
GAAATATGGAGTGA

Upstream 100 bases:

>100_bases
CAAGAGCGAAAACGGAAATTAAACAAGAGCTTCGCCAATTATAATCACATCAAAAAGCTGTCCGCTCACAGGACAGCTTT
TTTCCGATGGAGGAGAGAGG

Downstream 100 bases:

>100_bases
AGTATAGTTCCACCTCGATTAAGACACATTATGTGTGTGAGGAGGTGGAGTGTGATGGCGAAAATCGGTGTCGAGCAATC
GCTGACTGACGTGCAGCAGG

Product: putative N-acetyldiaminopimelate deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
METISPFVAIRRDLHKIPELGFQEFKTQQYLLNYIQSLPQERLDVRTWKTGIFVKVSGTAPRKTIGYRADIDGLPISEET
GLPYRSEHAGQMHACGHDVHMSIALGVLTHFAHNPIRDDLLFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEY
PVGTIATKEGLLFANTSELFIDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAVITIGKITSGTVQNVI
AEHARLEGTIRTLSIDAMQAVKRRIEALVRGVEVAYECEAVIDYGAMYHEVYNNPALTTEFIQFAETHTDMNVIRCKEAM
TGEDFGYMLAEIPGFMFWLGVDSPYGLHHAKLVPNEAAIDRAIAFLISYFSWKGNME

Sequences:

>Translated_377_residues
METISPFVAIRRDLHKIPELGFQEFKTQQYLLNYIQSLPQERLDVRTWKTGIFVKVSGTAPRKTIGYRADIDGLPISEET
GLPYRSEHAGQMHACGHDVHMSIALGVLTHFAHNPIRDDLLFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEY
PVGTIATKEGLLFANTSELFIDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAVITIGKITSGTVQNVI
AEHARLEGTIRTLSIDAMQAVKRRIEALVRGVEVAYECEAVIDYGAMYHEVYNNPALTTEFIQFAETHTDMNVIRCKEAM
TGEDFGYMLAEIPGFMFWLGVDSPYGLHHAKLVPNEAAIDRAIAFLISYFSWKGNME
>Mature_377_residues
METISPFVAIRRDLHKIPELGFQEFKTQQYLLNYIQSLPQERLDVRTWKTGIFVKVSGTAPRKTIGYRADIDGLPISEET
GLPYRSEHAGQMHACGHDVHMSIALGVLTHFAHNPIRDDLLFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEY
PVGTIATKEGLLFANTSELFIDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAVITIGKITSGTVQNVI
AEHARLEGTIRTLSIDAMQAVKRRIEALVRGVEVAYECEAVIDYGAMYHEVYNNPALTTEFIQFAETHTDMNVIRCKEAM
TGEDFGYMLAEIPGFMFWLGVDSPYGLHHAKLVPNEAAIDRAIAFLISYFSWKGNME

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily

Homologues:

Organism=Escherichia coli, GI87081880, Length=333, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPL_GEOTN (A4ILT6)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001125035.1
- ProteinModelPortal:   A4ILT6
- SMR:   A4ILT6
- STRING:   A4ILT6
- GeneID:   4965855
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_0912
- NMPDR:   fig|420246.5.peg.878
- eggNOG:   COG1473
- HOGENOM:   HBG708500
- OMA:   NANDMIV
- ProtClustDB:   CLSK873387
- BioCyc:   GTHE420246:GTNG_0912-MONOMER
- HAMAP:   MF_01692
- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650
- PIRSF:   PIRSF005962
- TIGRFAMs:   TIGR01891

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer

EC number: =3.5.1.47

Molecular weight: Translated: 41871; Mature: 41871

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00758 ARGE_DAPE_CPG2_1; PS00759 ARGE_DAPE_CPG2_2

Important sites: ACT_SITE 70-70 ACT_SITE 129-129

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METISPFVAIRRDLHKIPELGFQEFKTQQYLLNYIQSLPQERLDVRTWKTGIFVKVSGTA
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHEECCEEEEEECCCC
PRKTIGYRADIDGLPISEETGLPYRSEHAGQMHACGHDVHMSIALGVLTHFAHNPIRDDL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCE
LFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEYPVGTIATKEGLLFANTSELF
EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCEEEEECCEEE
IDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAVITIGKITSGTVQNVI
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCHHHHHHH
AEHARLEGTIRTLSIDAMQAVKRRIEALVRGVEVAYECEAVIDYGAMYHEVYNNPALTTE
HHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FIQFAETHTDMNVIRCKEAMTGEDFGYMLAEIPGFMFWLGVDSPYGLHHAKLVPNEAAID
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCHHHHH
RAIAFLISYFSWKGNME
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure
METISPFVAIRRDLHKIPELGFQEFKTQQYLLNYIQSLPQERLDVRTWKTGIFVKVSGTA
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHEECCEEEEEECCCC
PRKTIGYRADIDGLPISEETGLPYRSEHAGQMHACGHDVHMSIALGVLTHFAHNPIRDDL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCE
LFIFQPAEEGPGGAKPMLESDIMREWKPDMIVALHIAPEYPVGTIATKEGLLFANTSELF
EEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCEEECCCEEEEECCEEE
IDLKGKGGHAAFPHLANDMVVAACALVTQLQSIVARNVDPLDSAVITIGKITSGTVQNVI
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCHHHHHHH
AEHARLEGTIRTLSIDAMQAVKRRIEALVRGVEVAYECEAVIDYGAMYHEVYNNPALTTE
HHHHHHCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
FIQFAETHTDMNVIRCKEAMTGEDFGYMLAEIPGFMFWLGVDSPYGLHHAKLVPNEAAID
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCHHHHH
RAIAFLISYFSWKGNME
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA