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The map label for this gene is ykuM [H]

Identifier: 138894580

GI number: 138894580

Start: 984747

End: 985619

Strand: Direct

Name: ykuM [H]

Synonym: GTNG_0910

Alternate gene names: 138894580

Gene position: 984747-985619 (Clockwise)

Preceding gene: 138894578

Following gene: 138894581

Centisome position: 27.74

GC content: 43.41

Gene sequence:

>873_bases
TTGAATATTTCAGAGTATGAAATCCTCACTGTTTTGGCGGAAGAATTAAATATGAGAAAAGCCGCTGTCCGGCTGTATGT
TACCCAGTCTGCACTATCCCAACGGCTACAGACGATCGAGGCCAGCTGGAATGTGAAAATATTTATCCGGTCTCAGCGCG
GATTGCTGCTAACACCAGAGGGGGAAAAGATTGTTCAGCTTGCCAAAGAAATTGTGCAGAAAACGAACAAAGTAAAAGAA
GAAATGAAACAACTGGTCGGGCAAATCAGCGGGACATTAACGATAGCGGTGGCTTCCATCGTTGCTCAACATTGGCTGCC
TGCCGTGTTAAAAAGGTTTATGAAGTTATACCCCAATGTAAACGTTTCGTTGATGACGGGATGGACAAGTGAAGTCCTAA
GTCATATGTATGAAAATCGATGTCAACTTGGGATTGTTCGTGGAAAGCCAAATTGGAGCGGGATGGCGACACGTTTATTT
ACCGATCAGCTATATTTAGTAGACCAAGAAATTCAATCTTTGGAGCAATTGCGCCATACTGATCGGCCATTTATTCAATT
TAAAAGCGATTCAACTTATTCGTTGCATATTCAACAATGGTGGCATGAGCAATTTCAAGCCTTGCCGCCACGAACGGTGA
TGGTCGATCAAATTGAAACATGCAAACAGCTTGCTTATCATGGCGTTGGTTATGCGATTTTACCGGAAATTGCTTTAGGT
GATCGAGAACAACATCTTGTTCACATGATACCGTTAAAAACGAAGCATGGTGAGCCCATGACCAGAGATACATGGCTGAT
CAGTTCGGAAGTGGCATGGCAACTTCCACAAGTACAAGCCTTCGAGAAGACATTACGGCATTTTGCTCGATGA

Upstream 100 bases:

>100_bases
ATAAGGGTTCTACAACTATTTTATTTTTGTTATAACGATAAGAAAATGTGAAAAAAATAGACATAAATGATAAGAAAAAC
TTATCAAAGGGATGATCGTT

Downstream 100 bases:

>100_bases
ATTGGTGCTTGTCACAAGGCTCTCTGGTTTGCTAAAGTAAAAAAAGAACACAGGAATAAGGAGGATATTGGCTATGAAGA
TGATGGACGCCAATGAAATC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MNISEYEILTVLAEELNMRKAAVRLYVTQSALSQRLQTIEASWNVKIFIRSQRGLLLTPEGEKIVQLAKEIVQKTNKVKE
EMKQLVGQISGTLTIAVASIVAQHWLPAVLKRFMKLYPNVNVSLMTGWTSEVLSHMYENRCQLGIVRGKPNWSGMATRLF
TDQLYLVDQEIQSLEQLRHTDRPFIQFKSDSTYSLHIQQWWHEQFQALPPRTVMVDQIETCKQLAYHGVGYAILPEIALG
DREQHLVHMIPLKTKHGEPMTRDTWLISSEVAWQLPQVQAFEKTLRHFAR

Sequences:

>Translated_290_residues
MNISEYEILTVLAEELNMRKAAVRLYVTQSALSQRLQTIEASWNVKIFIRSQRGLLLTPEGEKIVQLAKEIVQKTNKVKE
EMKQLVGQISGTLTIAVASIVAQHWLPAVLKRFMKLYPNVNVSLMTGWTSEVLSHMYENRCQLGIVRGKPNWSGMATRLF
TDQLYLVDQEIQSLEQLRHTDRPFIQFKSDSTYSLHIQQWWHEQFQALPPRTVMVDQIETCKQLAYHGVGYAILPEIALG
DREQHLVHMIPLKTKHGEPMTRDTWLISSEVAWQLPQVQAFEKTLRHFAR
>Mature_290_residues
MNISEYEILTVLAEELNMRKAAVRLYVTQSALSQRLQTIEASWNVKIFIRSQRGLLLTPEGEKIVQLAKEIVQKTNKVKE
EMKQLVGQISGTLTIAVASIVAQHWLPAVLKRFMKLYPNVNVSLMTGWTSEVLSHMYENRCQLGIVRGKPNWSGMATRLF
TDQLYLVDQEIQSLEQLRHTDRPFIQFKSDSTYSLHIQQWWHEQFQALPPRTVMVDQIETCKQLAYHGVGYAILPEIALG
DREQHLVHMIPLKTKHGEPMTRDTWLISSEVAWQLPQVQAFEKTLRHFAR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=279, Percent_Identity=24.0143369175627, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=21.1155378486056, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787601, Length=116, Percent_Identity=31.0344827586207, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=295, Percent_Identity=22.3728813559322, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788296, Length=147, Percent_Identity=27.891156462585, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787530, Length=139, Percent_Identity=27.3381294964029, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789173, Length=153, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787589, Length=161, Percent_Identity=25.4658385093168, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=140, Percent_Identity=27.1428571428571, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788706, Length=125, Percent_Identity=29.6, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33562; Mature: 33562

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISEYEILTVLAEELNMRKAAVRLYVTQSALSQRLQTIEASWNVKIFIRSQRGLLLTPE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCC
GEKIVQLAKEIVQKTNKVKEEMKQLVGQISGTLTIAVASIVAQHWLPAVLKRFMKLYPNV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NVSLMTGWTSEVLSHMYENRCQLGIVRGKPNWSGMATRLFTDQLYLVDQEIQSLEQLRHT
CEEEEECCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRPFIQFKSDSTYSLHIQQWWHEQFQALPPRTVMVDQIETCKQLAYHGVGYAILPEIALG
CCCEEEEECCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCHHHCC
DREQHLVHMIPLKTKHGEPMTRDTWLISSEVAWQLPQVQAFEKTLRHFAR
CCHHHEEEEEEEECCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNISEYEILTVLAEELNMRKAAVRLYVTQSALSQRLQTIEASWNVKIFIRSQRGLLLTPE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCC
GEKIVQLAKEIVQKTNKVKEEMKQLVGQISGTLTIAVASIVAQHWLPAVLKRFMKLYPNV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NVSLMTGWTSEVLSHMYENRCQLGIVRGKPNWSGMATRLFTDQLYLVDQEIQSLEQLRHT
CEEEEECCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
DRPFIQFKSDSTYSLHIQQWWHEQFQALPPRTVMVDQIETCKQLAYHGVGYAILPEIALG
CCCEEEEECCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHCHHHCC
DREQHLVHMIPLKTKHGEPMTRDTWLISSEVAWQLPQVQAFEKTLRHFAR
CCHHHEEEEEEEECCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]