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The map label for this gene is 138894415

Identifier: 138894415

GI number: 138894415

Start: 811645

End: 812166

Strand: Reverse

Name: 138894415

Synonym: GTNG_0743

Alternate gene names: NA

Gene position: 812166-811645 (Counterclockwise)

Preceding gene: 138894416

Following gene: 138894414

Centisome position: 22.88

GC content: 47.13

Gene sequence:

>522_bases
ATGAAGTACGGCATTGTATTATTTCCATCAAAATGCATTCAAGATTTTGCCAACTCTTACCGAAAACGGTATGACAGCCA
TTACGCTCTTATTCCGCCGCACATCACGTTAAAATATCCGTTTGAAGCGAATGAGGGGCAATTGAAAGAGATGACGAAAG
AATTGCACCGTATCGCAGCGGAAACTCCTCCAATCCCCATCAAAGTGACAAAATTCAGCTCGTTTTACCCGACGAGCAAC
ATCATTTATTTGAAAGTGGAGCAAAACGACGTGCTTAAGCACCTCCATGAACAGCTGCACAGCGGCCTGTTCGCCGGCAA
GCCAGAATTTGCATTCGTGCCGCACATTACGATCGGCCGTGATTTACCGGGGGCGGAATACGCCGATGTCTACAGCCAAG
TGAAGCTGCAACACGTACATTTTGAAGAGACGATCGACCGCTTCCATCTCCTTTACCAGCTCGAAAACGGATCGTGGACC
GTGTATGACACATTTGTCGTTGGAGGAAAGGAAACGGTATAA

Upstream 100 bases:

>100_bases
ATGCGTGGACGTATTGGCAGCCTGACTTACCGAGAGCTGTATCCGCTATTTTGTCGCTGTAAACACATAGAAAAACAACC
ATCTAAGGAGGGAAATCGGG

Downstream 100 bases:

>100_bases
TGAACATCGCCATTGGAACAACAAAAGATCGCTCCTTGTACGAGGACGCTTTGCACGTCCGCCGGCTCGTATTTATCGAG
GAACAAGACGTGCCGGAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKYGIVLFPSKCIQDFANSYRKRYDSHYALIPPHITLKYPFEANEGQLKEMTKELHRIAAETPPIPIKVTKFSSFYPTSN
IIYLKVEQNDVLKHLHEQLHSGLFAGKPEFAFVPHITIGRDLPGAEYADVYSQVKLQHVHFEETIDRFHLLYQLENGSWT
VYDTFVVGGKETV

Sequences:

>Translated_173_residues
MKYGIVLFPSKCIQDFANSYRKRYDSHYALIPPHITLKYPFEANEGQLKEMTKELHRIAAETPPIPIKVTKFSSFYPTSN
IIYLKVEQNDVLKHLHEQLHSGLFAGKPEFAFVPHITIGRDLPGAEYADVYSQVKLQHVHFEETIDRFHLLYQLENGSWT
VYDTFVVGGKETV
>Mature_173_residues
MKYGIVLFPSKCIQDFANSYRKRYDSHYALIPPHITLKYPFEANEGQLKEMTKELHRIAAETPPIPIKVTKFSSFYPTSN
IIYLKVEQNDVLKHLHEQLHSGLFAGKPEFAFVPHITIGRDLPGAEYADVYSQVKLQHVHFEETIDRFHLLYQLENGSWT
VYDTFVVGGKETV

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y743_GEOTN (A4ILB9)

Other databases:

- EMBL:   CP000557
- RefSeq:   YP_001124868.1
- ProteinModelPortal:   A4ILB9
- SMR:   A4ILB9
- STRING:   A4ILB9
- GeneID:   4965686
- GenomeReviews:   CP000557_GR
- KEGG:   gtn:GTNG_0743
- NMPDR:   fig|420246.5.peg.722
- eggNOG:   COG1514
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   GTHE420246:GTNG_0743-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 20015; Mature: 20015

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGIVLFPSKCIQDFANSYRKRYDSHYALIPPHITLKYPFEANEGQLKEMTKELHRIAA
CCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHC
ETPPIPIKVTKFSSFYPTSNIIYLKVEQNDVLKHLHEQLHSGLFAGKPEFAFVPHITIGR
CCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECEEEECC
DLPGAEYADVYSQVKLQHVHFEETIDRFHLLYQLENGSWTVYDTFVVGGKETV
CCCCCHHHHHHHHHHHHEECHHHHHHHEEEEEEEECCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MKYGIVLFPSKCIQDFANSYRKRYDSHYALIPPHITLKYPFEANEGQLKEMTKELHRIAA
CCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHC
ETPPIPIKVTKFSSFYPTSNIIYLKVEQNDVLKHLHEQLHSGLFAGKPEFAFVPHITIGR
CCCCCEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEECEEEECC
DLPGAEYADVYSQVKLQHVHFEETIDRFHLLYQLENGSWTVYDTFVVGGKETV
CCCCCHHHHHHHHHHHHEECHHHHHHHEEEEEEEECCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA