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The map label for this gene is ypmQ [H]

Identifier: 138894256

GI number: 138894256

Start: 644908

End: 645498

Strand: Reverse

Name: ypmQ [H]

Synonym: GTNG_0582

Alternate gene names: 138894256

Gene position: 645498-644908 (Counterclockwise)

Preceding gene: 138894266

Following gene: 138894253

Centisome position: 18.18

GC content: 48.9

Gene sequence:

>591_bases
ATGAAAAAATGGTATATGATTGTCGCAGCCCTTGTGCTTGTTGGCATTAGCATCGGCATCTTTTACTTTGCTGTTTATAA
ACCGTCTGCTATGCGTCTGCCCGATGATGTGACGATGGAAACAGCATGGGGAGCCCCTTATTCCTTTGACGACTTGCCTC
CAAAAGTTCGACTCGTCGAATTCATCTATACGAACTGCCCGGATATTTGCCCAAATACGACGATGCAGATGGCGAAACTG
CGCGACCGGCTGCAAAAAGCTGGAGTGTTCGGGCGTGACGTGGAATTCGTTACGATCACCATTGACCCCGCACGCGACAC
GAAGGAAAAACTGCAAACATATGCGAATACGTTTGGAGTGACTGCTGATGGACAAGGGTGGGTGTTTTTGCGTGGCAGTG
AAGCAGAGACAAAAAAGACGGCAGACGCCTTCAACTTCCAATACCGTGACCCCGGAAACGGCATGATGGTGCATACGTCA
CTCGCTTACTTGCTCAATCGGGACGGACGGGTCATTGAACAGATCGGCATGGGGGAATCACGATTTCGTGTTGATGAAGT
GTACGAAGTGATTATGGATGAATTATCATGA

Upstream 100 bases:

>100_bases
AAACTTTTTTTAATTAAAAAAATAGACGCATAACGTTCATAAAAACGATATTTTTTCTGTCCATCATTTTGGTATGATCA
ATAGTAGAGGAGTGATGATC

Downstream 100 bases:

>100_bases
CGGTTCGATATACGGGCAACCTATGGAAATGAAAAAGGGAGCATTGTCTGCTCCCTTTTTTATTGACCATTCGCATTGAA
CGATTGACACTTTAAATAAG

Product: lipoprotein

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKKWYMIVAALVLVGISIGIFYFAVYKPSAMRLPDDVTMETAWGAPYSFDDLPPKVRLVEFIYTNCPDICPNTTMQMAKL
RDRLQKAGVFGRDVEFVTITIDPARDTKEKLQTYANTFGVTADGQGWVFLRGSEAETKKTADAFNFQYRDPGNGMMVHTS
LAYLLNRDGRVIEQIGMGESRFRVDEVYEVIMDELS

Sequences:

>Translated_196_residues
MKKWYMIVAALVLVGISIGIFYFAVYKPSAMRLPDDVTMETAWGAPYSFDDLPPKVRLVEFIYTNCPDICPNTTMQMAKL
RDRLQKAGVFGRDVEFVTITIDPARDTKEKLQTYANTFGVTADGQGWVFLRGSEAETKKTADAFNFQYRDPGNGMMVHTS
LAYLLNRDGRVIEQIGMGESRFRVDEVYEVIMDELS
>Mature_196_residues
MKKWYMIVAALVLVGISIGIFYFAVYKPSAMRLPDDVTMETAWGAPYSFDDLPPKVRLVEFIYTNCPDICPNTTMQMAKL
RDRLQKAGVFGRDVEFVTITIDPARDTKEKLQTYANTFGVTADGQGWVFLRGSEAETKKTADAFNFQYRDPGNGMMVHTS
LAYLLNRDGRVIEQIGMGESRFRVDEVYEVIMDELS

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Drosophila melanogaster, GI19920710, Length=143, Percent_Identity=32.1678321678322, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22241; Mature: 22241

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWYMIVAALVLVGISIGIFYFAVYKPSAMRLPDDVTMETAWGAPYSFDDLPPKVRLVE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHH
FIYTNCPDICPNTTMQMAKLRDRLQKAGVFGRDVEFVTITIDPARDTKEKLQTYANTFGV
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
TADGQGWVFLRGSEAETKKTADAFNFQYRDPGNGMMVHTSLAYLLNRDGRVIEQIGMGES
CCCCCEEEEEECCCCCHHHHHHHHCEEEECCCCCEEEHHHHHHHHCCCCHHHHHHCCCCH
RFRVDEVYEVIMDELS
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKWYMIVAALVLVGISIGIFYFAVYKPSAMRLPDDVTMETAWGAPYSFDDLPPKVRLVE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHH
FIYTNCPDICPNTTMQMAKLRDRLQKAGVFGRDVEFVTITIDPARDTKEKLQTYANTFGV
HHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
TADGQGWVFLRGSEAETKKTADAFNFQYRDPGNGMMVHTSLAYLLNRDGRVIEQIGMGES
CCCCCEEEEEECCCCCHHHHHHHHCEEEECCCCCEEEHHHHHHHHCCCCHHHHHHCCCCH
RFRVDEVYEVIMDELS
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]