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The map label for this gene is yhgD [H]

Identifier: 138894246

GI number: 138894246

Start: 633638

End: 634210

Strand: Direct

Name: yhgD [H]

Synonym: GTNG_0572

Alternate gene names: 138894246

Gene position: 633638-634210 (Clockwise)

Preceding gene: 138894245

Following gene: 138894247

Centisome position: 17.85

GC content: 47.12

Gene sequence:

>573_bases
ATGGCAAGCGATCGTAAACGGCAGATTATCGAAGCAGCAGCTCAATCGTTTGCTGCTTTCGGCTACAAGGCAACGACGAT
GGAACAGATCGCCAAGCTCGCCAACGTCGGCAAAGGGACGATTTACACGTTTTTTAAAAGCAAAGAGGAGTTGCTTGATG
AAATCGTTTCGTCCTTGATCGCGGAAATCAAAGTAGAAGCTGAGCAAGCGATGGATTCGTCGTTGCCGTTTTCCGAAAAC
GTTCATCGAGCTCTGTACCGTATTTTAGAATTCCGCCAGCGCCACCAGCTGACAGCGAAGCTGCTCCAAGAAATGCGCAG
TATTGGCACGATAGCGGTGCAGGAAGTGCTGACTAAGTTCGACCGGGCGATGGTTGAGTTTATTCGGCAAAAAATTGAGG
CGGCGGTGGAAAAAGGGGAAATCCGCCCATGCAATGCGGAAATAACGGCGTTTTTAATGCTAAAGATGTACATTGCTCTC
ATTGTCGATTGGGAGAAAGATCATCAACCGCTGACAAAAGAACAAATTGCCGAATTGTTTGCGCTTTATTTTTTACAAGG
ATTGTCCAAGTAG

Upstream 100 bases:

>100_bases
ATGTGTATTATTTTTGCCCTTTACGCCGGAGGCAGGTCTATGATAGGATAAAAATGAATTGACCAAATCGTTCATTCAGT
CATATTAAAGGATGAGGCTA

Downstream 100 bases:

>100_bases
ATAATCCTATCTTTTTTTGATCTTTTTGACTAAATGAACGAATTGGTCATTTATTTAAAGGAGGGAGCCACTCTATGTTG
ATAAAAGAACTGCGCACGAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MASDRKRQIIEAAAQSFAAFGYKATTMEQIAKLANVGKGTIYTFFKSKEELLDEIVSSLIAEIKVEAEQAMDSSLPFSEN
VHRALYRILEFRQRHQLTAKLLQEMRSIGTIAVQEVLTKFDRAMVEFIRQKIEAAVEKGEIRPCNAEITAFLMLKMYIAL
IVDWEKDHQPLTKEQIAELFALYFLQGLSK

Sequences:

>Translated_190_residues
MASDRKRQIIEAAAQSFAAFGYKATTMEQIAKLANVGKGTIYTFFKSKEELLDEIVSSLIAEIKVEAEQAMDSSLPFSEN
VHRALYRILEFRQRHQLTAKLLQEMRSIGTIAVQEVLTKFDRAMVEFIRQKIEAAVEKGEIRPCNAEITAFLMLKMYIAL
IVDWEKDHQPLTKEQIAELFALYFLQGLSK
>Mature_189_residues
ASDRKRQIIEAAAQSFAAFGYKATTMEQIAKLANVGKGTIYTFFKSKEELLDEIVSSLIAEIKVEAEQAMDSSLPFSENV
HRALYRILEFRQRHQLTAKLLQEMRSIGTIAVQEVLTKFDRAMVEFIRQKIEAAVEKGEIRPCNAEITAFLMLKMYIALI
VDWEKDHQPLTKEQIAELFALYFLQGLSK

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21725; Mature: 21593

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASDRKRQIIEAAAQSFAAFGYKATTMEQIAKLANVGKGTIYTFFKSKEELLDEIVSSLI
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AEIKVEAEQAMDSSLPFSENVHRALYRILEFRQRHQLTAKLLQEMRSIGTIAVQEVLTKF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRAMVEFIRQKIEAAVEKGEIRPCNAEITAFLMLKMYIALIVDWEKDHQPLTKEQIAELF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ALYFLQGLSK
HHHHHHHCCC
>Mature Secondary Structure 
ASDRKRQIIEAAAQSFAAFGYKATTMEQIAKLANVGKGTIYTFFKSKEELLDEIVSSLI
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
AEIKVEAEQAMDSSLPFSENVHRALYRILEFRQRHQLTAKLLQEMRSIGTIAVQEVLTKF
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DRAMVEFIRQKIEAAVEKGEIRPCNAEITAFLMLKMYIALIVDWEKDHQPLTKEQIAELF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
ALYFLQGLSK
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1459957; 9579061; 9384377 [H]