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The map label for this gene is yfjD [C]

Identifier: 138894214

GI number: 138894214

Start: 602266

End: 603516

Strand: Direct

Name: yfjD [C]

Synonym: GTNG_0540

Alternate gene names: 138894214

Gene position: 602266-603516 (Clockwise)

Preceding gene: 138894213

Following gene: 138894216

Centisome position: 16.96

GC content: 49.24

Gene sequence:

>1251_bases
TTGTTCGGTTGGTTTTTTCTTTTCCTGCTCGTCAACGCATTGTTTGCTTCAGCCGAGGCGGCTTTTTCATCAGCAAGCAA
AGCCCGGTTAAAGCATTATGCGGAAGAGCACCCACACAACCAGCGTCTCCAGGCAGTGATCGAACAGCTTGATCGTGCAT
TGTTGGCGCTTGCCATTGCCAACCGTCTGACGAGCATTACAGCGGTTGCGCTGTTTATTTATATCGCTGCTTCACTACTT
GGGGAACAGACTGGTTTATTTGTCTCGATTGCGGTGATGACCATTTTGTCCATCGTCTTCAGTGACATTTTGCCAAAATC
GATGGCGAAAGAGCAGGCAGAAACGCTTGCGATTCGGTATGTCAGCCTCGCCTATGGGCTGATGAAACTCATGGCGCCCG
TAACGGCATTGTTTCAAGCGATGAGGGAACGAATTTCTCGACGGTTCACCAACGGAGCTGCGGCGCCGGCCGTCACGGAG
GAAGATATCAAAGTGATGGTCGAGTTAAGTGAAGAAGAAGGGGTCATTGACAACAAGGAAAAAGAACTGATTCAACGTTC
GCTCGATTTTGATGAGATTTTAGTCGAAGAAATTTTCACACCGCGTGCCGATATGGTGGCGGTTGAGGTGAATCAGCCGA
TTGAAGAGATTCGTGACGTATTTTTGGAAGAAAGGTACTCCCGCATTCCAGTGTATGAAGGGGATATTGATAACGTCATT
GGTATTTTATCGGAGAGTGACTTTTTCAGCGAACTTGTACAAAACCACGATGTGCGCATCCGTGAATTGTTGCGCCAGCC
GCTGTTTGTCGTCGAGTCGATGAAAGTGTCCGACTTGCTGCCAGAACTGCAAAAAAGCAAAGTACACATGGCGATCGTCG
TCGATGAGTTCGGCGGCACAGCCGGCTTGATTACGCTCGAGGATATTATCGAGCAAATCGTCGGCGAAATATGGGATGAA
CATGACGAAGCGGTGAAAACGGTGCGCCAAATCGATGAACATAGCTTTGAATTCAGCGCCGAACTACCGCTTGACGAATT
TTGTGAAGTGATGAAGATCGATGTGCCAGAAAGCGAATCGCGTACGTTGGGTGGCTGGATTTTTGAAATGTTTGAACGCA
TTCCGGCAGTCGGCGAAACGTTGCAGTACGGTCCGTTGACGCTGACCGTTCGCCAAGTTGATAATCGACGCATTCGCAAA
GTGCTTGTCTCTTTGAATCAACCACTCGCCGGGCAGGCGGGAGGCATGTGA

Upstream 100 bases:

>100_bases
TTTGCTTTCACAGGCATGTTTCGGTGAAAAAATGGATATGAATAACATAGTCATGTTCCTATAGGAGTGTGAAGATTCTT
TGGAAGAGTGGCCGTTAAGG

Downstream 100 bases:

>100_bases
CAGTGAGATGAAAGAGCCCCAGGCTAACTGCCTGGGGCTTTTGCCATCTATTATGAAGTTGTCTGTGAAATGATTATTGA
ACGTTACCGAATTGGCCACC

Product: hemolysin-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MFGWFFLFLLVNALFASAEAAFSSASKARLKHYAEEHPHNQRLQAVIEQLDRALLALAIANRLTSITAVALFIYIAASLL
GEQTGLFVSIAVMTILSIVFSDILPKSMAKEQAETLAIRYVSLAYGLMKLMAPVTALFQAMRERISRRFTNGAAAPAVTE
EDIKVMVELSEEEGVIDNKEKELIQRSLDFDEILVEEIFTPRADMVAVEVNQPIEEIRDVFLEERYSRIPVYEGDIDNVI
GILSESDFFSELVQNHDVRIRELLRQPLFVVESMKVSDLLPELQKSKVHMAIVVDEFGGTAGLITLEDIIEQIVGEIWDE
HDEAVKTVRQIDEHSFEFSAELPLDEFCEVMKIDVPESESRTLGGWIFEMFERIPAVGETLQYGPLTLTVRQVDNRRIRK
VLVSLNQPLAGQAGGM

Sequences:

>Translated_416_residues
MFGWFFLFLLVNALFASAEAAFSSASKARLKHYAEEHPHNQRLQAVIEQLDRALLALAIANRLTSITAVALFIYIAASLL
GEQTGLFVSIAVMTILSIVFSDILPKSMAKEQAETLAIRYVSLAYGLMKLMAPVTALFQAMRERISRRFTNGAAAPAVTE
EDIKVMVELSEEEGVIDNKEKELIQRSLDFDEILVEEIFTPRADMVAVEVNQPIEEIRDVFLEERYSRIPVYEGDIDNVI
GILSESDFFSELVQNHDVRIRELLRQPLFVVESMKVSDLLPELQKSKVHMAIVVDEFGGTAGLITLEDIIEQIVGEIWDE
HDEAVKTVRQIDEHSFEFSAELPLDEFCEVMKIDVPESESRTLGGWIFEMFERIPAVGETLQYGPLTLTVRQVDNRRIRK
VLVSLNQPLAGQAGGM
>Mature_416_residues
MFGWFFLFLLVNALFASAEAAFSSASKARLKHYAEEHPHNQRLQAVIEQLDRALLALAIANRLTSITAVALFIYIAASLL
GEQTGLFVSIAVMTILSIVFSDILPKSMAKEQAETLAIRYVSLAYGLMKLMAPVTALFQAMRERISRRFTNGAAAPAVTE
EDIKVMVELSEEEGVIDNKEKELIQRSLDFDEILVEEIFTPRADMVAVEVNQPIEEIRDVFLEERYSRIPVYEGDIDNVI
GILSESDFFSELVQNHDVRIRELLRQPLFVVESMKVSDLLPELQKSKVHMAIVVDEFGGTAGLITLEDIIEQIVGEIWDE
HDEAVKTVRQIDEHSFEFSAELPLDEFCEVMKIDVPESESRTLGGWIFEMFERIPAVGETLQYGPLTLTVRQVDNRRIRK
VLVSLNQPLAGQAGGM

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=387, Percent_Identity=27.6485788113695, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI40068055, Length=304, Percent_Identity=25.9868421052632, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI40068053, Length=304, Percent_Identity=25.9868421052632, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI94681046, Length=303, Percent_Identity=25.0825082508251, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI145693175, Length=405, Percent_Identity=24.9382716049383, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1790664, Length=412, Percent_Identity=24.5145631067961, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1786879, Length=242, Percent_Identity=34.297520661157, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87082033, Length=270, Percent_Identity=27.7777777777778, Blast_Score=128, Evalue=8e-31,
Organism=Escherichia coli, GI1788119, Length=351, Percent_Identity=24.5014245014245, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71980512, Length=358, Percent_Identity=25.9776536312849, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46839; Mature: 46839

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGWFFLFLLVNALFASAEAAFSSASKARLKHYAEEHPHNQRLQAVIEQLDRALLALAIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
NRLTSITAVALFIYIAASLLGEQTGLFVSIAVMTILSIVFSDILPKSMAKEQAETLAIRY
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLAYGLMKLMAPVTALFQAMRERISRRFTNGAAAPAVTEEDIKVMVELSEEEGVIDNKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEECCCCCCCCCHH
KELIQRSLDFDEILVEEIFTPRADMVAVEVNQPIEEIRDVFLEERYSRIPVYEGDIDNVI
HHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
GILSESDFFSELVQNHDVRIRELLRQPLFVVESMKVSDLLPELQKSKVHMAIVVDEFGGT
HHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCC
AGLITLEDIIEQIVGEIWDEHDEAVKTVRQIDEHSFEFSAELPLDEFCEVMKIDVPESES
CCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHCCCCCCCCC
RTLGGWIFEMFERIPAVGETLQYGPLTLTVRQVDNRRIRKVLVSLNQPLAGQAGGM
CHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MFGWFFLFLLVNALFASAEAAFSSASKARLKHYAEEHPHNQRLQAVIEQLDRALLALAIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
NRLTSITAVALFIYIAASLLGEQTGLFVSIAVMTILSIVFSDILPKSMAKEQAETLAIRY
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSLAYGLMKLMAPVTALFQAMRERISRRFTNGAAAPAVTEEDIKVMVELSEEEGVIDNKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHEEECCCCCCCCCHH
KELIQRSLDFDEILVEEIFTPRADMVAVEVNQPIEEIRDVFLEERYSRIPVYEGDIDNVI
HHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
GILSESDFFSELVQNHDVRIRELLRQPLFVVESMKVSDLLPELQKSKVHMAIVVDEFGGT
HHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCC
AGLITLEDIIEQIVGEIWDEHDEAVKTVRQIDEHSFEFSAELPLDEFCEVMKIDVPESES
CCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHCCCCCCCCC
RTLGGWIFEMFERIPAVGETLQYGPLTLTVRQVDNRRIRKVLVSLNQPLAGQAGGM
CHHHHHHHHHHHHCCHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]