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The map label for this gene is ykoE [H]

Identifier: 138894206

GI number: 138894206

Start: 595162

End: 595752

Strand: Direct

Name: ykoE [H]

Synonym: GTNG_0532

Alternate gene names: 138894206

Gene position: 595162-595752 (Clockwise)

Preceding gene: 138894204

Following gene: 138894207

Centisome position: 16.76

GC content: 50.25

Gene sequence:

>591_bases
ATGGTGAAGACAGCAAGAGGATTGAAGTTGGCTGACATTTTGACAACGATTGTGATTGCAATCGTGTTTGGTGTCATTTA
CAAAGTATGGTCCCCAGTATATGAAGTCGTGAAAGTGTTCGGGGTTCATGCCGATCAATTGGTTTACGGCATGTGGTTTA
TCGCTTCATCGCTTACCTATTTGCTCATCCGTAAGCCAGGAGTGGCGCTGCTTGCCGAAATTGCGGCTTCGTCCGGCGAA
TTGATCATGGGGTCGCAATGGGGGCTTGAGGTGCTCATTTATGGAGTTGTTCAAGGATTGTTTGCTGAGCTTGTGTTTGC
GGCGTTCCGCTATCGGCGCTTTGACGTGTTCGTCGTATCGTTAAGCGCAGTCAGCGCCACGGTCGGTTCGCTCATCATGG
ACTTTTACAAAGGATATATCGAGGCGCTAGCCCCATGGAATATGGCGCTCTTTTTGCTGGCACGTTTTGTTGGTGCCATC
CTCATTTCCGGCGTGTTCGCTGTCTCGTTGGCCAAGGCGCTTGAGAAAGCCGGGGTGACACAGATGTGGCGGCCAGCTTC
AAAAGAAGATTATGATGCGCTGAACCGATAA

Upstream 100 bases:

>100_bases
GAATATAAGTTTTTGAAGATGGCGTACCCGTTCGAATGATGACAGTCCGTTAGACTGACATTGATGGAGCGGGGGACGAT
TGTGGAAGGAGAGGCATGCG

Downstream 100 bases:

>100_bases
GGCGGCTGATAAACGATGGGACATGGAATTACAATCGATCGGCTGCGCCTCAAATTTCCCGGACATCGTGAGCTGTTGTT
TCACGATTTATCACTGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MVKTARGLKLADILTTIVIAIVFGVIYKVWSPVYEVVKVFGVHADQLVYGMWFIASSLTYLLIRKPGVALLAEIAASSGE
LIMGSQWGLEVLIYGVVQGLFAELVFAAFRYRRFDVFVVSLSAVSATVGSLIMDFYKGYIEALAPWNMALFLLARFVGAI
LISGVFAVSLAKALEKAGVTQMWRPASKEDYDALNR

Sequences:

>Translated_196_residues
MVKTARGLKLADILTTIVIAIVFGVIYKVWSPVYEVVKVFGVHADQLVYGMWFIASSLTYLLIRKPGVALLAEIAASSGE
LIMGSQWGLEVLIYGVVQGLFAELVFAAFRYRRFDVFVVSLSAVSATVGSLIMDFYKGYIEALAPWNMALFLLARFVGAI
LISGVFAVSLAKALEKAGVTQMWRPASKEDYDALNR
>Mature_196_residues
MVKTARGLKLADILTTIVIAIVFGVIYKVWSPVYEVVKVFGVHADQLVYGMWFIASSLTYLLIRKPGVALLAEIAASSGE
LIMGSQWGLEVLIYGVVQGLFAELVFAAFRYRRFDVFVVSLSAVSATVGSLIMDFYKGYIEALAPWNMALFLLARFVGAI
LISGVFAVSLAKALEKAGVTQMWRPASKEDYDALNR

Specific function: Part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG4721

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017195 [H]

Pfam domain/function: PF09819 ABC_cobalt [H]

EC number: NA

Molecular weight: Translated: 21514; Mature: 21514

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTARGLKLADILTTIVIAIVFGVIYKVWSPVYEVVKVFGVHADQLVYGMWFIASSLTY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLIRKPGVALLAEIAASSGELIMGSQWGLEVLIYGVVQGLFAELVFAAFRYRRFDVFVVS
HHHCCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVSATVGSLIMDFYKGYIEALAPWNMALFLLARFVGAILISGVFAVSLAKALEKAGVT
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QMWRPASKEDYDALNR
HHCCCCCCCCHHHCCC
>Mature Secondary Structure
MVKTARGLKLADILTTIVIAIVFGVIYKVWSPVYEVVKVFGVHADQLVYGMWFIASSLTY
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LLIRKPGVALLAEIAASSGELIMGSQWGLEVLIYGVVQGLFAELVFAAFRYRRFDVFVVS
HHHCCCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSAVSATVGSLIMDFYKGYIEALAPWNMALFLLARFVGAILISGVFAVSLAKALEKAGVT
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QMWRPASKEDYDALNR
HHCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]