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The map label for this gene is dppB [H]

Identifier: 138894153

GI number: 138894153

Start: 533712

End: 534716

Strand: Direct

Name: dppB [H]

Synonym: GTNG_0479

Alternate gene names: 138894153

Gene position: 533712-534716 (Clockwise)

Preceding gene: 138894152

Following gene: 138894154

Centisome position: 15.03

GC content: 46.67

Gene sequence:

>1005_bases
GTGCTGTCGTATATAGTGAGAAGGGTGCTGATGATTATTCCCGTCTTATTTGGCATGTCGTTAGTTGTGTTTTTTATGAT
CCGAGCGATTCCTGGCAACCCCGCACAAGTCATTTTAGGACAAAAGGCGACGAAGGAAGCAGTGGCGGCTTTGACCCATA
AACTTGGATTGGACGAGCCTTGGTATGTCCAATATGTCAAATATATTGGCGGGTTGCTGCGTGGCGACTTAGGGGAGTCT
ATTCGCACCGGCGCTCCCATCGCCGAAGAAATTTGGCCGTATTTGGCGGCAACGCTCGAGCTGTCGTTAGCAGCAATGTT
GATTGCTGTTGTGATTGGTGTCAACGCCGGCATTATTAGCGCTTGGTTTCAGCATTCATGGTTCGATTATATTGCGATGG
TATTAGCGTTAATCGGCGTTTCGATGCCCATTTTTTGGCTCGGGTTGATGGAGCAGTGGTTGTTTTCGATTCAGCTCGAT
TGGCTGCCGACGTCAGGTCGGGAGGACGTGCGTAACCCCATTGAGCCGATTACCCATCTCTACTTGATCGATACACTGCT
CAGTGGAAATACGGAGCAGTTTTGGCAAGTCGTCCAACATCTCGTGTTGCCGAGTATGGCGTTAGCGACGATTCCGATGG
CGATTATTGCCCGCATGACACGCTCTAGCATGCTCGAAGTGATGAAATCGGATTATATCCGCACCGCAAGAGCGAAAGGG
GTAAGCATGTTTTGGGTTGTGTATAAGCATTCGTTAAAAAACGCCATTATTCCCGTATTGACTGTCATCGGCTTGCAAAC
AGGGCTATTGCTTGGCGGAGCAATTTTGACGGAAACGATTTTCAGCTGGCCTGGCATTGGACGTTATATTTATGATGCAA
TCGGTTACCGAGATTATCCAGTCATTCAATCAGGAATTTTAATTATTGCTGCCATTTTCATTTTCATTAATTTAATCGTT
GACTTGCTTTATGCAGCGATTGATCCGCGTATTAAGTACAATTAA

Upstream 100 bases:

>100_bases
GACAAATTTACAAAAGTGGAATTTCAATAATCAGTTGGGAGAGGGGAAGGAGCGCATCTTCCCCTCTTTGTTTACCGCAC
GTTAAGGGAGGGATACTTGG

Downstream 100 bases:

>100_bases
CGAAGAGGGAGGCGTGTGTATGGCTGAATTAGCGCGCACACCGGCAACGCCACCGACAGCGATTGAGGAAGAAAGAACTG
TTTCATTATGGGGAGAAGCT

Product: peptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLSYIVRRVLMIIPVLFGMSLVVFFMIRAIPGNPAQVILGQKATKEAVAALTHKLGLDEPWYVQYVKYIGGLLRGDLGES
IRTGAPIAEEIWPYLAATLELSLAAMLIAVVIGVNAGIISAWFQHSWFDYIAMVLALIGVSMPIFWLGLMEQWLFSIQLD
WLPTSGREDVRNPIEPITHLYLIDTLLSGNTEQFWQVVQHLVLPSMALATIPMAIIARMTRSSMLEVMKSDYIRTARAKG
VSMFWVVYKHSLKNAIIPVLTVIGLQTGLLLGGAILTETIFSWPGIGRYIYDAIGYRDYPVIQSGILIIAAIFIFINLIV
DLLYAAIDPRIKYN

Sequences:

>Translated_334_residues
MLSYIVRRVLMIIPVLFGMSLVVFFMIRAIPGNPAQVILGQKATKEAVAALTHKLGLDEPWYVQYVKYIGGLLRGDLGES
IRTGAPIAEEIWPYLAATLELSLAAMLIAVVIGVNAGIISAWFQHSWFDYIAMVLALIGVSMPIFWLGLMEQWLFSIQLD
WLPTSGREDVRNPIEPITHLYLIDTLLSGNTEQFWQVVQHLVLPSMALATIPMAIIARMTRSSMLEVMKSDYIRTARAKG
VSMFWVVYKHSLKNAIIPVLTVIGLQTGLLLGGAILTETIFSWPGIGRYIYDAIGYRDYPVIQSGILIIAAIFIFINLIV
DLLYAAIDPRIKYN
>Mature_334_residues
MLSYIVRRVLMIIPVLFGMSLVVFFMIRAIPGNPAQVILGQKATKEAVAALTHKLGLDEPWYVQYVKYIGGLLRGDLGES
IRTGAPIAEEIWPYLAATLELSLAAMLIAVVIGVNAGIISAWFQHSWFDYIAMVLALIGVSMPIFWLGLMEQWLFSIQLD
WLPTSGREDVRNPIEPITHLYLIDTLLSGNTEQFWQVVQHLVLPSMALATIPMAIIARMTRSSMLEVMKSDYIRTARAKG
VSMFWVVYKHSLKNAIIPVLTVIGLQTGLLLGGAILTETIFSWPGIGRYIYDAIGYRDYPVIQSGILIIAAIFIFINLIV
DLLYAAIDPRIKYN

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=47.9289940828402, Blast_Score=318, Evalue=3e-88,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=43.1137724550898, Blast_Score=281, Evalue=3e-77,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=43.030303030303, Blast_Score=246, Evalue=1e-66,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=36.7952522255193, Blast_Score=215, Evalue=4e-57,
Organism=Escherichia coli, GI1787497, Length=335, Percent_Identity=35.5223880597015, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=36.5671641791045, Blast_Score=191, Evalue=4e-50,
Organism=Escherichia coli, GI1788504, Length=379, Percent_Identity=26.3852242744063, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37316; Mature: 37316

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]