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The map label for this gene is sigW [H]

Identifier: 138894123

GI number: 138894123

Start: 506278

End: 506820

Strand: Direct

Name: sigW [H]

Synonym: GTNG_0449

Alternate gene names: 138894123

Gene position: 506278-506820 (Clockwise)

Preceding gene: 138894122

Following gene: 138894124

Centisome position: 14.26

GC content: 47.88

Gene sequence:

>543_bases
ATGGAAAGGGAGCTAATTGAGCGAATCCAGCACGGCGATGAAGCGGCGTTCGCTGAATTGTATGAGCTTTATGGAGAATA
TGCTCTGCGCGTAGCGGCAGCGGTGACTGGCAGCAGTGCGAACGCGGCGGATGCTGTACAAGAAACGTTTATCCGCGTGT
ATGACCATATCGGGCGCTTTGACCCTGCGAAGCCGTTTCGACCATGGTTTTATCGCATTTTAATCAATGAATGCCGGCGG
TTAATGAAAAAGCAGCGAGCCGTGACGATCTTGAGCGAGGAGATGGGGGCTGCCGATCTGCTGACGTATGAAGACCGTTA
CACGTTTGCACAGTATGAAGAGTTATATAAGGCGATCGGGCGATTGAAGGAAAAGCAGCGCATTCCTGTCGTGTTGAAAT
ATTTGCAAGGATTTACCACTGAGGAAATTGCTGATATTCTCGATTTAAACGTCAATACAGTAAAATCACGTCTGTTTAAA
GCACGAAACCAACTAATGAAATGGATGGAAATGGAGGGAGAAAGGGGTGCGACAAATGGATGA

Upstream 100 bases:

>100_bases
TGCTCGGTTTACGTAGCAAGCGATTTTTTTATTAAAAATAAAAACGATTTGCTGTTATCGCGGGTATATAAAGTGAAAAC
TCCTTTCAGGAGGTGGAGAG

Downstream 100 bases:

>100_bases
ACGGAAATGGGATGAAATGATTCAAGAGGCGTTGTTGTACGGAACTGATAAGGCAGCTGAGCAGAAAGAAGAGGTCTGGA
TGCATATTCGCTCTCGGATG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MERELIERIQHGDEAAFAELYELYGEYALRVAAAVTGSSANAADAVQETFIRVYDHIGRFDPAKPFRPWFYRILINECRR
LMKKQRAVTILSEEMGAADLLTYEDRYTFAQYEELYKAIGRLKEKQRIPVVLKYLQGFTTEEIADILDLNVNTVKSRLFK
ARNQLMKWMEMEGERGATNG

Sequences:

>Translated_180_residues
MERELIERIQHGDEAAFAELYELYGEYALRVAAAVTGSSANAADAVQETFIRVYDHIGRFDPAKPFRPWFYRILINECRR
LMKKQRAVTILSEEMGAADLLTYEDRYTFAQYEELYKAIGRLKEKQRIPVVLKYLQGFTTEEIADILDLNVNTVKSRLFK
ARNQLMKWMEMEGERGATNG
>Mature_180_residues
MERELIERIQHGDEAAFAELYELYGEYALRVAAAVTGSSANAADAVQETFIRVYDHIGRFDPAKPFRPWFYRILINECRR
LMKKQRAVTILSEEMGAADLLTYEDRYTFAQYEELYKAIGRLKEKQRIPVVLKYLQGFTTEEIADILDLNVNTVKSRLFK
ARNQLMKWMEMEGERGATNG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=173, Percent_Identity=33.5260115606936, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20929; Mature: 20929

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERELIERIQHGDEAAFAELYELYGEYALRVAAAVTGSSANAADAVQETFIRVYDHIGRF
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
DPAKPFRPWFYRILINECRRLMKKQRAVTILSEEMGAADLLTYEDRYTFAQYEELYKAIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHH
RLKEKQRIPVVLKYLQGFTTEEIADILDLNVNTVKSRLFKARNQLMKWMEMEGERGATNG
HHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MERELIERIQHGDEAAFAELYELYGEYALRVAAAVTGSSANAADAVQETFIRVYDHIGRF
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
DPAKPFRPWFYRILINECRRLMKKQRAVTILSEEMGAADLLTYEDRYTFAQYEELYKAIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHH
RLKEKQRIPVVLKYLQGFTTEEIADILDLNVNTVKSRLFKARNQLMKWMEMEGERGATNG
HHHHHCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]