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The map label for this gene is yukD [H]

Identifier: 138894091

GI number: 138894091

Start: 470489

End: 470914

Strand: Direct

Name: yukD [H]

Synonym: GTNG_0417

Alternate gene names: 138894091

Gene position: 470489-470914 (Clockwise)

Preceding gene: 138894090

Following gene: 138894092

Centisome position: 13.25

GC content: 46.24

Gene sequence:

>426_bases
ATGGCGCTTTTTTCTGTATGCATGTTAGATAAAGAGTTCAATGCTGTTCCTCTTGAACACCGTGAGTGTTGCGACCATTC
CTTCCAAGCCCATGTAGGTGCCGCCTATCGGATGGGGAGGTCGCCGCAGGCAACAATGAAGCTTCATTTTTCAATGAGCA
TGTATATAATCGGAGGATTCCCAACCATGTATATTCAGGTCACGATTGACCTTCGCCATTATACGCACGATGTACTAGAT
CTTCGTTTATCCGATCTGTATTCGATTAAGAAGATGGTGGAGATTGTTTGGCAGTTAAAAAACATATCGACGCCACCGAG
GGAAGGCTGCTGGGTGCGGGTTGAAAATAAACAAGCGGTCTTCCCTGGTTGTGCGACATTACAGGCGAGCGGTATTACCA
ATGGGGACCGCATTGTGATTTTGTAA

Upstream 100 bases:

>100_bases
CCGCTACCATCTTGGAAGACACGGATCAACAAATTGCCAGCCAAATTCGCGGATAAAGGGAGACATTCGGAAAAAAGCGC
TACAAATCTTACAAAAGATT

Downstream 100 bases:

>100_bases
CCATCGAGAATGGGATAAGGAGCATTATTTTATTATGAGTGAAAAAAAGACGTATTTGGAAACGCAACTAGATGCTGTCA
TGATCAATGATCAGCCATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MALFSVCMLDKEFNAVPLEHRECCDHSFQAHVGAAYRMGRSPQATMKLHFSMSMYIIGGFPTMYIQVTIDLRHYTHDVLD
LRLSDLYSIKKMVEIVWQLKNISTPPREGCWVRVENKQAVFPGCATLQASGITNGDRIVIL

Sequences:

>Translated_141_residues
MALFSVCMLDKEFNAVPLEHRECCDHSFQAHVGAAYRMGRSPQATMKLHFSMSMYIIGGFPTMYIQVTIDLRHYTHDVLD
LRLSDLYSIKKMVEIVWQLKNISTPPREGCWVRVENKQAVFPGCATLQASGITNGDRIVIL
>Mature_140_residues
ALFSVCMLDKEFNAVPLEHRECCDHSFQAHVGAAYRMGRSPQATMKLHFSMSMYIIGGFPTMYIQVTIDLRHYTHDVLDL
RLSDLYSIKKMVEIVWQLKNISTPPREGCWVRVENKQAVFPGCATLQASGITNGDRIVIL

Specific function: Unknown

COG id: COG5417

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014921 [H]

Pfam domain/function: PF08817 YukD [H]

EC number: NA

Molecular weight: Translated: 16052; Mature: 15921

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFSVCMLDKEFNAVPLEHRECCDHSFQAHVGAAYRMGRSPQATMKLHFSMSMYIIGGF
CCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECC
PTMYIQVTIDLRHYTHDVLDLRLSDLYSIKKMVEIVWQLKNISTPPREGCWVRVENKQAV
CEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEE
FPGCATLQASGITNGDRIVIL
CCCCCEEEECCCCCCCEEEEC
>Mature Secondary Structure 
ALFSVCMLDKEFNAVPLEHRECCDHSFQAHVGAAYRMGRSPQATMKLHFSMSMYIIGGF
CEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEEECC
PTMYIQVTIDLRHYTHDVLDLRLSDLYSIKKMVEIVWQLKNISTPPREGCWVRVENKQAV
CEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEE
FPGCATLQASGITNGDRIVIL
CCCCCEEEECCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9168598; 9384377 [H]