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The map label for this gene is yciR [C]

Identifier: 138894050

GI number: 138894050

Start: 428407

End: 430815

Strand: Direct

Name: yciR [C]

Synonym: GTNG_0376

Alternate gene names: 138894050

Gene position: 428407-430815 (Clockwise)

Preceding gene: 138894048

Following gene: 138894051

Centisome position: 12.07

GC content: 49.73

Gene sequence:

>2409_bases
TTGACAGCTAGTGCTGTTTATATGTATGCCCATCGGATGGCAAAGCAGCACGGGGCATTGTCACCATGGAGCGCAGCACC
GAAGCTGACTGCCGCCTTCTTTATATGTTCACTCTTTCTTTTAGGCGGCGGAATAGCCTGGATTGATGAAGCGGAGAACC
GCGAATATGGTGAATACAAGGAAAGCGCGAAGCAAATCGCCGGCATGATTGCCAGTGATTTGGCCGCCAGGGGACATGAG
CAGCTTGATGAAAACGCGGATCGTCTGCCTGTGTATCATTCGATCCTAGCTGCACTTGGACGATGGCAGCAACACGGCCT
CGTGCGTAGTGTATATACGTTAAAAAAGAACGAGCACGGCGAGTTGTATGTTGTTGTGGCTCCAGCGGTCGATGGCAGCC
GGAGCGGCCGCATCGACGGAAAACATGAGCAGGCTGTTCCGCCCGGGACGATTTACCGTCATGCTTTTGCAGAAATAGAG
GAAGCGTTTCGCGGCCGATTTGCAATGGAAAAGCATCCGAGGGCGGACGGATCCGGGAAAAGCATCAGCACATTTATGCC
GATTCATGGGCTTGACGGGACAGTAAACGCAGTCGTCGGCATCGATTATGATGCGAAGGTATATGAGCGGCGCTTGAAAA
AAGAGCGGCAAAAGGCAGCAGCAATCATGATGATGATTTATTTCATTGCCGTCTCCATTTATTTGTTGGTGCTGCATCGA
CAAATAGGACGGAAGGTGTTGGCCGCCCATAAAAAAACGCTAGCGGCGAACGAGCAGCGATTGCGGCAGTTGGCAGAAAT
GACGATGGAAGGAGTCATCGTGTGTGCCTCCGGGAAAATTGTCGAGGTCAACGAAGCGGCATGCCGTCTGCTTGGTTATA
GGGAAAGCGAACTCGTTCACTTGCCAATCAATGATGTAGTTGTCGACGGATCAATGAGGCCGAGTTGTTCGAACAACGGG
GTGGAGCGATTTGAAATCGAGCTGCGCCGAAAAGATGGAGCGGTGTTTCCGGCGGAAATCGTTCAGCATTGCTACGATGA
TGAAGGGCAAAAAGTAACGGTCGTCGCCGTCCGCGATTTAACGGCGCAAAAACAAAACGAAGAGCCTATGCACGATATCG
TCAGCCATGACGAATTGACCGGGCTGGCGAACAAAGAGGCGATGTATAAGGTAGTGGAGCGCCGTCTTGCTGATGCAAAA
AGATTTCATCGAGAAGCAGCAGTTATGCTTTTAGAGGTGACTAGCATTAAGACGATTAACGATTTTTACGGCTATGCCGT
TGGAGATGAAGTGTTGCTCCATTTGGCACGTCGTTGGAGTGAGCAAGAAGGAATAACGGTCGGACGTTGGAGCGGGAATG
AATTTATCGCTGTGCTGCCAGATAGCTCAAATGAAAAAGCAGAGGAAGCTGCAAAACGGTTGATTGAAGTTGCAGACGAA
CCGATTGCTGTTAACGGCCTTGAATTATATGTGACTGTAAACGTTGGCATCAGCGTCTATCCAAAGGATGGAGAGGAGAC
AAAAACGTTAATCCGCAAGGCAGATATTGCTCGCTATGAGGCGAGGGAAAAAGTGGTGAGTGATTTTCTCTTTTTCAACG
AACCGATGGCTGACCGGCTGCATGAAAAGATGGCCATGGAACGTGATTTACGGCGTGCGCTTGAAAGGGAAGAGTTCGAG
CTGTACTACCAGCCGCAGATTCGGCTTTATGATCGACAAGTCATTGGTATGGAAGCGCTTGTTCGTTGGCGCCACCCGGA
AAAAGGATTCATTCCGCCATCCCTATTTATTCCAATCGCTGAACAAACAGGAATGATTATTCGAATCAACGAATGGGTGA
TTCGCACCGCCTGCCAGCAAACGAAACAGCTGATCGATCAGTTTCCCCATTTGTCTGTCTCTGTCAATTTGTCGCCGTAC
GAATTTGAAAGCCGACGGTTTGTCGATAAGCTCGCCCGCCTGCTCGCTGACACCGGGCTGCCGCCGCACCATTTAGATCT
TGAAATTACAGAGCGAATGACGATGGATACAGAGCATGCATTCGATATTTTGTCGAAACTGAAGTCGCTCGGCGTGACGA
TCAGCATGGACGATTTCGGCACCGGTTACAGCTCGCTCAGCTACTTGACTGATTTGCCGATCGATCGGCTGAAAATTGAC
CGTTCATTTGTCCAGCATATTCAAGGAAAAAAAGATGTCATCTTGCCGTCCATTATCCGCCTCGGGCATAATATAGGTGT
AAAAGTATTAGCCGAAGGAGTAGAAACAGAGACCGAAGCGGCCTATTTACAAGGAAAACGGTGTGATGAAGCGCAAGGAT
ATTACTTTTCCCCGCCGCTTCCGTATGGCGAATTTGTTCGTTTTTTAACTGAACAGCATGCGAGGCGGCAGGCACAGGAG
CTGACGTAA

Upstream 100 bases:

>100_bases
GAACTAACTTTATAATGAAAGAAGCGCGTCGAAAAATCTATGACGGTGATGATTGATGTCGAATAAATTCGAATATCTTG
TATACATATTAGGAGTTCTC

Downstream 100 bases:

>100_bases
AATGGATGGGTTTTGGCGCATTGCCGAAGAGAAAATTCGTGAAGCGATGAAAAACGGAGAGTTTGACGAGTTGCCTGGTT
TTGGGAAGCCGCTTGAGCTC

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 802; Mature: 801

Protein sequence:

>802_residues
MTASAVYMYAHRMAKQHGALSPWSAAPKLTAAFFICSLFLLGGGIAWIDEAENREYGEYKESAKQIAGMIASDLAARGHE
QLDENADRLPVYHSILAALGRWQQHGLVRSVYTLKKNEHGELYVVVAPAVDGSRSGRIDGKHEQAVPPGTIYRHAFAEIE
EAFRGRFAMEKHPRADGSGKSISTFMPIHGLDGTVNAVVGIDYDAKVYERRLKKERQKAAAIMMMIYFIAVSIYLLVLHR
QIGRKVLAAHKKTLAANEQRLRQLAEMTMEGVIVCASGKIVEVNEAACRLLGYRESELVHLPINDVVVDGSMRPSCSNNG
VERFEIELRRKDGAVFPAEIVQHCYDDEGQKVTVVAVRDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERRLADAK
RFHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSEQEGITVGRWSGNEFIAVLPDSSNEKAEEAAKRLIEVADE
PIAVNGLELYVTVNVGISVYPKDGEETKTLIRKADIARYEAREKVVSDFLFFNEPMADRLHEKMAMERDLRRALEREEFE
LYYQPQIRLYDRQVIGMEALVRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPHLSVSVNLSPY
EFESRRFVDKLARLLADTGLPPHHLDLEITERMTMDTEHAFDILSKLKSLGVTISMDDFGTGYSSLSYLTDLPIDRLKID
RSFVQHIQGKKDVILPSIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQHARRQAQE
LT

Sequences:

>Translated_802_residues
MTASAVYMYAHRMAKQHGALSPWSAAPKLTAAFFICSLFLLGGGIAWIDEAENREYGEYKESAKQIAGMIASDLAARGHE
QLDENADRLPVYHSILAALGRWQQHGLVRSVYTLKKNEHGELYVVVAPAVDGSRSGRIDGKHEQAVPPGTIYRHAFAEIE
EAFRGRFAMEKHPRADGSGKSISTFMPIHGLDGTVNAVVGIDYDAKVYERRLKKERQKAAAIMMMIYFIAVSIYLLVLHR
QIGRKVLAAHKKTLAANEQRLRQLAEMTMEGVIVCASGKIVEVNEAACRLLGYRESELVHLPINDVVVDGSMRPSCSNNG
VERFEIELRRKDGAVFPAEIVQHCYDDEGQKVTVVAVRDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERRLADAK
RFHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSEQEGITVGRWSGNEFIAVLPDSSNEKAEEAAKRLIEVADE
PIAVNGLELYVTVNVGISVYPKDGEETKTLIRKADIARYEAREKVVSDFLFFNEPMADRLHEKMAMERDLRRALEREEFE
LYYQPQIRLYDRQVIGMEALVRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPHLSVSVNLSPY
EFESRRFVDKLARLLADTGLPPHHLDLEITERMTMDTEHAFDILSKLKSLGVTISMDDFGTGYSSLSYLTDLPIDRLKID
RSFVQHIQGKKDVILPSIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQHARRQAQE
LT
>Mature_801_residues
TASAVYMYAHRMAKQHGALSPWSAAPKLTAAFFICSLFLLGGGIAWIDEAENREYGEYKESAKQIAGMIASDLAARGHEQ
LDENADRLPVYHSILAALGRWQQHGLVRSVYTLKKNEHGELYVVVAPAVDGSRSGRIDGKHEQAVPPGTIYRHAFAEIEE
AFRGRFAMEKHPRADGSGKSISTFMPIHGLDGTVNAVVGIDYDAKVYERRLKKERQKAAAIMMMIYFIAVSIYLLVLHRQ
IGRKVLAAHKKTLAANEQRLRQLAEMTMEGVIVCASGKIVEVNEAACRLLGYRESELVHLPINDVVVDGSMRPSCSNNGV
ERFEIELRRKDGAVFPAEIVQHCYDDEGQKVTVVAVRDLTAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERRLADAKR
FHREAAVMLLEVTSIKTINDFYGYAVGDEVLLHLARRWSEQEGITVGRWSGNEFIAVLPDSSNEKAEEAAKRLIEVADEP
IAVNGLELYVTVNVGISVYPKDGEETKTLIRKADIARYEAREKVVSDFLFFNEPMADRLHEKMAMERDLRRALEREEFEL
YYQPQIRLYDRQVIGMEALVRWRHPEKGFIPPSLFIPIAEQTGMIIRINEWVIRTACQQTKQLIDQFPHLSVSVNLSPYE
FESRRFVDKLARLLADTGLPPHHLDLEITERMTMDTEHAFDILSKLKSLGVTISMDDFGTGYSSLSYLTDLPIDRLKIDR
SFVQHIQGKKDVILPSIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPLPYGEFVRFLTEQHARRQAQEL
T

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=451, Percent_Identity=31.0421286031042, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081921, Length=557, Percent_Identity=30.3411131059246, Blast_Score=230, Evalue=3e-61,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=36.046511627907, Blast_Score=161, Evalue=2e-40,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=33.8582677165354, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI226510982, Length=431, Percent_Identity=27.1461716937355, Blast_Score=158, Evalue=2e-39,
Organism=Escherichia coli, GI1787055, Length=448, Percent_Identity=25.4464285714286, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=34.8360655737705, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI87081845, Length=262, Percent_Identity=33.587786259542, Blast_Score=152, Evalue=1e-37,
Organism=Escherichia coli, GI1786507, Length=262, Percent_Identity=34.3511450381679, Blast_Score=146, Evalue=7e-36,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=34, Blast_Score=144, Evalue=3e-35,
Organism=Escherichia coli, GI1788849, Length=245, Percent_Identity=32.6530612244898, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=253, Percent_Identity=27.6679841897233, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1788381, Length=528, Percent_Identity=23.4848484848485, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI87082096, Length=263, Percent_Identity=27.7566539923954, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=23.4285714285714, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=30.0613496932515, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788956, Length=155, Percent_Identity=30.3225806451613, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1789650, Length=437, Percent_Identity=19.6796338672769, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 90716; Mature: 90585

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASAVYMYAHRMAKQHGALSPWSAAPKLTAAFFICSLFLLGGGIAWIDEAENREYGEYK
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
ESAKQIAGMIASDLAARGHEQLDENADRLPVYHSILAALGRWQQHGLVRSVYTLKKNEHG
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
ELYVVVAPAVDGSRSGRIDGKHEQAVPPGTIYRHAFAEIEEAFRGRFAMEKHPRADGSGK
CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SISTFMPIHGLDGTVNAVVGIDYDAKVYERRLKKERQKAAAIMMMIYFIAVSIYLLVLHR
CEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIGRKVLAAHKKTLAANEQRLRQLAEMTMEGVIVCASGKIVEVNEAACRLLGYRESELVH
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCEEEECHHHHHHHCCCCCCEEE
LPINDVVVDGSMRPSCSNNGVERFEIELRRKDGAVFPAEIVQHCYDDEGQKVTVVAVRDL
ECCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECH
TAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERRLADAKRFHREAAVMLLEVTSIKTIN
HHHCCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
DFYGYAVGDEVLLHLARRWSEQEGITVGRWSGNEFIAVLPDSSNEKAEEAAKRLIEVADE
HHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCC
PIAVNGLELYVTVNVGISVYPKDGEETKTLIRKADIARYEAREKVVSDFLFFNEPMADRL
CEEECCEEEEEEEEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
HEKMAMERDLRRALEREEFELYYQPQIRLYDRQVIGMEALVRWRHPEKGFIPPSLFIPIA
HHHHHHHHHHHHHHCCCCEEEEECCCEEEECHHHHHHHHHHHHCCCCCCCCCCHHEEEEC
EQTGMIIRINEWVIRTACQQTKQLIDQFPHLSVSVNLSPYEFESRRFVDKLARLLADTGL
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
PPHHLDLEITERMTMDTEHAFDILSKLKSLGVTISMDDFGTGYSSLSYLTDLPIDRLKID
CCCCCCEEEHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHH
RSFVQHIQGKKDVILPSIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPL
HHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCEEECCCC
PYGEFVRFLTEQHARRQAQELT
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TASAVYMYAHRMAKQHGALSPWSAAPKLTAAFFICSLFLLGGGIAWIDEAENREYGEYK
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
ESAKQIAGMIASDLAARGHEQLDENADRLPVYHSILAALGRWQQHGLVRSVYTLKKNEHG
HHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
ELYVVVAPAVDGSRSGRIDGKHEQAVPPGTIYRHAFAEIEEAFRGRFAMEKHPRADGSGK
CEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SISTFMPIHGLDGTVNAVVGIDYDAKVYERRLKKERQKAAAIMMMIYFIAVSIYLLVLHR
CEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIGRKVLAAHKKTLAANEQRLRQLAEMTMEGVIVCASGKIVEVNEAACRLLGYRESELVH
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEECCCCEEEECHHHHHHHCCCCCCEEE
LPINDVVVDGSMRPSCSNNGVERFEIELRRKDGAVFPAEIVQHCYDDEGQKVTVVAVRDL
ECCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECH
TAQKQNEEPMHDIVSHDELTGLANKEAMYKVVERRLADAKRFHREAAVMLLEVTSIKTIN
HHHCCCCCHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHH
DFYGYAVGDEVLLHLARRWSEQEGITVGRWSGNEFIAVLPDSSNEKAEEAAKRLIEVADE
HHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCC
PIAVNGLELYVTVNVGISVYPKDGEETKTLIRKADIARYEAREKVVSDFLFFNEPMADRL
CEEECCEEEEEEEEECEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
HEKMAMERDLRRALEREEFELYYQPQIRLYDRQVIGMEALVRWRHPEKGFIPPSLFIPIA
HHHHHHHHHHHHHHCCCCEEEEECCCEEEECHHHHHHHHHHHHCCCCCCCCCCHHEEEEC
EQTGMIIRINEWVIRTACQQTKQLIDQFPHLSVSVNLSPYEFESRRFVDKLARLLADTGL
CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC
PPHHLDLEITERMTMDTEHAFDILSKLKSLGVTISMDDFGTGYSSLSYLTDLPIDRLKID
CCCCCCEEEHHHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHCCCHHHHHHH
RSFVQHIQGKKDVILPSIIRLGHNIGVKVLAEGVETETEAAYLQGKRCDEAQGYYFSPPL
HHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHCCCCCHHHHHHHCCCCCCCCCCEEECCCC
PYGEFVRFLTEQHARRQAQELT
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]